View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15441_low_2 (Length: 364)
Name: NF15441_low_2
Description: NF15441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15441_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 41635856 - 41636222
Alignment:
| Q |
1 |
ctttcatttaagcaaatagtgcccttgtttctaatctcatgtggttcacaaacgaatctgttaactatttaaaagcgtcaatattccacaaaacttgttt |
100 |
Q |
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| T |
41635856 |
ctttcatttaagcaaatagtgcccttgtttctaatctcatgtggttcacaaacgaatctgttaactatttaaaagcgccaatattccacaaaacttgttt |
41635955 |
T |
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| Q |
101 |
tcttgacattaaaaatgtgcatatatttatgacagacgattataacttagcatggttct---ttcgtatatgatattttcattttctctccctttatatc |
197 |
Q |
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| T |
41635956 |
tcttgacattaaaaatgtgcatatattcatggcagacgattataacttagcatggttcttctttcgtatatgatattttcattttctctccctttatatc |
41636055 |
T |
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| Q |
198 |
tgatgaagtgatttctattcgtgtgttcatttatataacttgcattcattctctacttacttaggttatatgcacacacactcatgcaaattttactggc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41636056 |
tgatgaagtgatttctattcgtgtgttcatttatataacttgcattcattctctacttacttaggttatatgcacacacactcatgcaaattttactggc |
41636155 |
T |
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| Q |
298 |
actcaaaccttttcaaatcacctatatatttataatgatcttttgctaaaccattttgtgtcacatg |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41636156 |
actcaaaccttttcaaatcacctatatatttataatgatcttttgctaaaccattttgtgtcacatg |
41636222 |
T |
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