View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15441_low_3 (Length: 243)
Name: NF15441_low_3
Description: NF15441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15441_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 41705140 - 41705358
Alignment:
| Q |
1 |
acaccactccatctacaaattcaaaaactcttctcctctctctgtattcaagttccaacacnnnnnnnncaaatac--tgtttaaccaaatggcttctcc |
98 |
Q |
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| T |
41705140 |
acaccactccatctacaaattcaaaaactcttctcctctct--gtattcaagttccaacacaaaaaaa-caaataccctgtttaaccaaatggcttctcc |
41705236 |
T |
|
| Q |
99 |
cctgttatttctcctcatcatcacactcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccataatagaattcaac |
198 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41705237 |
cctgttatttctcctcctcatcacactcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccatgatagaattcaac |
41705336 |
T |
|
| Q |
199 |
acaacccaccacctccttaaat |
220 |
Q |
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|||||||||||||||||||||| |
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| T |
41705337 |
acaacccaccacctccttaaat |
41705358 |
T |
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