View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15441_low_4 (Length: 242)
Name: NF15441_low_4
Description: NF15441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15441_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 40785679 - 40785464
Alignment:
| Q |
9 |
agcacagacaaaagaccggcttcagctccaagtgcaatgataaggatgttgaagattaagtaaaggtaagtaggcctgagagaggaaggtaataagggtg |
108 |
Q |
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| T |
40785679 |
agcaccgacaaaagaccggcttcagctccaagtgcaatgataaggatgttgaagattaagtaaaggtaagtaggcctgagagaggaaggtaacaagggtg |
40785580 |
T |
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| Q |
109 |
tgatcacaaggagaagaagtaagatagagagaactataacttgagatttattaactttgttcatggtcatcttgataatagagaaagataaagggaatta |
208 |
Q |
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| T |
40785579 |
tgatcacaaggagaagaagtaagatagagagaactataacttgagatttattaactttgttcatggtcatcttgataatagagaaagataaagggaatta |
40785480 |
T |
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| Q |
209 |
gacttagtggtatagg |
224 |
Q |
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| T |
40785479 |
gacttagtggtatagg |
40785464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 40793416 - 40793265
Alignment:
| Q |
27 |
gcttcagctccaagtgcaatgataaggatgttgaagattaagtaaaggtaagtaggcctgagagaggaaggtaataagggtgtgatcacaaggagaagaa |
126 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||| | |||||||| |||||||||||||||||||||| | |
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| T |
40793416 |
gcttcagctccaagtgcaatgataaggaggttgaagattaagtaaaggtaactgggcctaagaaaagaaggtaagaagggtgtgatcacaaggagaaaag |
40793317 |
T |
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| Q |
127 |
gtaagatagagagaactataacttgagatttattaactttgttcatggtcat |
178 |
Q |
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| T |
40793316 |
ctaggaaagagagaactattacttgagatttatcaactttgttcatggtcat |
40793265 |
T |
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