View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15442_high_11 (Length: 318)
Name: NF15442_high_11
Description: NF15442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15442_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 14892199 - 14891908
Alignment:
| Q |
9 |
gaagaagctaaactatcccgcccaaattggcaaaaatgatacaaaacataatgtggtactatcgcccccttgttagtttttatcatctcagacaatgtgg |
108 |
Q |
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| T |
14892199 |
gaagaagctaaactatcccgcccaaattggcaaaaatgatacaaaacataatgtggtactatcgccccctagttagtttttatcatctcagacaatgtgg |
14892100 |
T |
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| Q |
109 |
ttttcaaataaaatgagaaagagtagttcttaaaaaatataaaagtaaaccctgatttagttcttaagcatcactgtctctccaactcaaaccctaaagt |
208 |
Q |
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| T |
14892099 |
ttttcaaataaaatgagaaagagtagttcttaaaaaatataaaagtaaaccctgatttagttcttaagcatcattgtctctccaactcaaaccctaaagt |
14892000 |
T |
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| Q |
209 |
atatgtctcaatccatttgtcgaatctgtctcattagtcctgcagttatatatcgacataacactaaaagtatcatgacagataaacgtctt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14891999 |
atatgtctcaatccatttgtcgaatctgtctcattagtcctactgttatatatcgacataacactaaaagtatcatgacggataaacgtctt |
14891908 |
T |
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