View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15442_high_18 (Length: 228)
Name: NF15442_high_18
Description: NF15442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15442_high_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 3621551 - 3621324
Alignment:
| Q |
1 |
caaagtattccaccaacacgtacaacggcttcccattcaaacgttcacgaccctgtcacatatgtacgtacgtattcacatgaaccatttggctaaaact |
100 |
Q |
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| T |
3621551 |
caaagtattccaccaacacgtacaacggcttcccattcaaacgttcacgaccctgtcacatatgtacgtacgtattcacatgaatcatttggctaaaact |
3621452 |
T |
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| Q |
101 |
tatatacaatgtcacagaaacagtttttaatgtgctagacagcaacaaacaaagtcattttcattatacagaaatacaaaatacacataactacagttcc |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||| |
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| T |
3621451 |
tatataaaatgtcacagaaacagtttttaatgtgctagacagcaacaaacaaagtcattttcattaaacagaaatacaaaatacacataccttcagttcc |
3621352 |
T |
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| Q |
201 |
ggtaattcaattacaaattcacactcca |
228 |
Q |
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||||||||||||||| || ||||||||| |
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| T |
3621351 |
ggtaattcaattacacatgcacactcca |
3621324 |
T |
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