View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15442_high_2 (Length: 565)
Name: NF15442_high_2
Description: NF15442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15442_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 4 - 445
Target Start/End: Original strand, 17257237 - 17257681
Alignment:
| Q |
4 |
caaaggtaaatagttgatttatactccataaaagtacatgttcaactcccaccgtcaccgtaaggacctcattggtgatatcaacattcattgtatggtt |
103 |
Q |
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| T |
17257237 |
caaaggtaaatagttgatttatactccataaaagtacatgttcaactcccaccgtcaacgtaacgacctcgttggtgatatcaacattcattgtatggtt |
17257336 |
T |
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| Q |
104 |
tgacatgtgtcctgactcatttgaaagactagaaatgatcacatcttta-ctttaaggtttcaaaagtagaagaggtggtagatgcgataaataatctat |
202 |
Q |
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| T |
17257337 |
tgacatgtgtccagactcatttgaaaggctagaaatgatcgcatctttaactttaaggtttccaaagtagaagaggtggtagatgcgataaataatctat |
17257436 |
T |
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| Q |
203 |
cttaaaaatgggttttaagtaacaagttgacctctccatgtctttattatgagtcgttcaatgtccttttcaattgtatgctaaggtaatttgtgatcgg |
302 |
Q |
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| T |
17257437 |
cttaaaaatgggttttaggtaacaagttgacctctccatgtctttagtatgagtcgttcaatgtccttttcaattgtatgctaaggtaatttgtgatcgg |
17257536 |
T |
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| Q |
303 |
tcttgga-tagttttgcttatgagagaggcaggtactacttatactttgtcacttagcgtaaatttagtatcacttgtacttatctcatcttatttaaca |
401 |
Q |
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| T |
17257537 |
tcttggattatatttgcttatgagagaggcaggtactacttatactttgtcactgagcgtaaatttagtatcatttgtacttatctcatcttatttaaca |
17257636 |
T |
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| Q |
402 |
taaaattca-nnnnnnngtaatctgaagaaagaaaggaaggaaac |
445 |
Q |
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| T |
17257637 |
taaaattcattttttttgtaatctgaaaaaagaaaggaaggaaac |
17257681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 453 - 549
Target Start/End: Original strand, 17260894 - 17260990
Alignment:
| Q |
453 |
ctttcctttcgttgtatggttgatcttaaatgacattagtggtagaacagttttccttttccattgttgctccccagtcaatttcacaagcactatt |
549 |
Q |
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| T |
17260894 |
ctttcctttccttgtatggttgatcttaaatgacattagtggtagaacagttttccttttccattgttgctcccgagtcaatttcacaagcactatt |
17260990 |
T |
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