View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15442_high_3 (Length: 533)
Name: NF15442_high_3
Description: NF15442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15442_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 38 - 526
Target Start/End: Original strand, 9451433 - 9451942
Alignment:
| Q |
38 |
ggtttctctcgttggattcttctaatctttatgtttatgaaccaaggatttgaatctgttaaaagtatcaaacacatcacttttctattgataaaatagg |
137 |
Q |
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| T |
9451433 |
ggtttctctcgttggattcttctaatctttatgtttatgaaccaaggatttgaatctgttaaaagtatcaaacacatcacttttctattgataaaatagg |
9451532 |
T |
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| Q |
138 |
aataatcatagggcacga---------------------aaaactaacagtgtatttttatttagtttggtttatatcctccagatttctattacagtta |
216 |
Q |
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| T |
9451533 |
aataatcatagggcacgaggtagaatagtccaaactctaaaaactaacagtgtatttttatttagtttggtttatatcctccagatttctattacagtta |
9451632 |
T |
|
| Q |
217 |
atccaaacaaaacaagttttgtgacaattgaaatcatttatacaacattgtatacaaatatgcttttatgtatacaatatgcaacttctgcgaaaattga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9451633 |
atccaaacaaaacaagttttgtgacaattgaaatcatttatacaacattgtatacaaatatgcttttatgtatacaatatgcaacttctgcgaaaattga |
9451732 |
T |
|
| Q |
317 |
aatgatttatacatagttgatatttattataacatatttctacggttaatccaaacacaacaagttttgtgttgaacaaaatgacataacagtcaagcca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9451733 |
aatgatttatacatagttgatatttattataacatatttctacggttaatccaaacacaacaagttttgtgttgaacaaaatgacataacagtcaagcca |
9451832 |
T |
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| Q |
417 |
tctcttgcactttctccttccctttgtcgtcatcctttttcttgttaaatgggaaaggtctaaaccctttttgaagcaatttctcaacctcctcaaactg |
516 |
Q |
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| T |
9451833 |
tctcttgcactttctccttccctttgtcgtcatcctttttcttgttaaatgggaaaggtctaaaccctttttgaagcaatttctcaacctcctcaaactg |
9451932 |
T |
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| Q |
517 |
aaggcctttg |
526 |
Q |
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| T |
9451933 |
aaggcctttg |
9451942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 376 - 526
Target Start/End: Original strand, 9440567 - 9440716
Alignment:
| Q |
376 |
acaagttttgtgttgaacaaaatgacataacagtcaagccatctcttgcactttctccttccctttgtcgtcatcctttttcttgttaaatgggaaaggt |
475 |
Q |
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||||||| ||| |||||||||| ||||||||| |||||| || | || ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9440567 |
acaagttgtgtcttgaacaaaa-gacataacaatcaagctatgtgtttcacttcctccttccctttgtcatcatcctttttcttgttaaatgggaaaggt |
9440665 |
T |
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| Q |
476 |
ctaaaccctttttgaagcaatttctcaacctcctcaaactgaaggcctttg |
526 |
Q |
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| T |
9440666 |
ctaaaccctttctgaagcaatttctcaacctcctcaaactgaagacctttg |
9440716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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