View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15442_high_4 (Length: 531)
Name: NF15442_high_4
Description: NF15442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15442_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 40848543 - 40848862
Alignment:
| Q |
18 |
atggttaaaaaatatactcttctttcacggtaacgtatctaattagttgaattatttcgtaacttttcatttgcattcgtagatttgcatggtataaatg |
117 |
Q |
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| T |
40848543 |
atggttaaaaaatatactcttctttcacggtaacgtatctatttagttgaattatttcgtaacttttcatttgcattcgtagatttgcatggtataaatg |
40848642 |
T |
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| Q |
118 |
annnnnnnnnnnnnnngttctggagggacatttgaatcattctcatcattttcttccgttttcttctaaaacactctatagctcatttggtgctttcccc |
217 |
Q |
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| T |
40848643 |
atttttttttgtttttgttctggagggacatttgaatcattctcatcattttcttccgtttccttctaaaactctctatagctcatttggctgtttccc- |
40848741 |
T |
|
| Q |
218 |
ttttccccgtgttatgtctattaatcataaactgagtgcacctcattcatttattgaatcattgtaaaatagaaaaatgattacaacctaagtgaaggag |
317 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40848742 |
ttttcccattgttatgtctattaatcataaactgagtgcacctcattcatt-attgaatcattgtaaaatagaaaaatgattacaacctaagtgaaggag |
40848840 |
T |
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| Q |
318 |
gaggatactccttttatataag |
339 |
Q |
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|||||||||||||||||||||| |
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| T |
40848841 |
gaggatactccttttatataag |
40848862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 392 - 507
Target Start/End: Original strand, 40848915 - 40849030
Alignment:
| Q |
392 |
ttagttagtgagcctaaatcttattcattgcctatagtgtatctcgttgatttgtttgtaatagtaaaatttgaagacatttgtaatgaagtttatacat |
491 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40848915 |
ttagttagtgagccttaatcttattcattgcctatagtgtatctcgttgatttgtttgtaatagtaaaatttgaagacatttgtaatgaagtttacacat |
40849014 |
T |
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| Q |
492 |
tcgattttccaatcac |
507 |
Q |
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| T |
40849015 |
tcgattttccaatcac |
40849030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 8131948 - 8131902
Alignment:
| Q |
18 |
atggttaaaaaatatactcttctttcacggtaacgtatctaattagt |
64 |
Q |
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|||||| ||||||||||||| ||||||||||||| |||||||||||| |
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| T |
8131948 |
atggttcaaaaatatactctactttcacggtaacatatctaattagt |
8131902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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