View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15442_low_1 (Length: 790)

Name: NF15442_low_1
Description: NF15442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15442_low_1
NF15442_low_1
[»] chr1 (6 HSPs)
chr1 (18-790)||(41532262-41533032)
chr1 (432-487)||(23090357-23090412)
chr1 (440-487)||(37892624-37892671)
chr1 (315-385)||(25225827-25225897)
chr1 (663-730)||(23090589-23090656)
chr1 (412-487)||(29244418-29244493)
[»] chr7 (7 HSPs)
chr7 (554-732)||(44583367-44583545)
chr7 (413-484)||(30067233-30067304)
chr7 (413-484)||(45136905-45136976)
chr7 (434-487)||(44583612-44583665)
chr7 (313-385)||(21712532-21712604)
chr7 (440-487)||(26168111-26168158)
chr7 (224-297)||(11643131-11643204)
[»] chr6 (5 HSPs)
chr6 (579-733)||(34418167-34418321)
chr6 (329-490)||(23308142-23308303)
chr6 (440-487)||(25972129-25972176)
chr6 (440-487)||(25976569-25976616)
chr6 (324-385)||(34417912-34417973)
[»] chr3 (7 HSPs)
chr3 (339-484)||(924709-924854)
chr3 (440-487)||(18255209-18255256)
chr3 (413-484)||(18987307-18987378)
chr3 (430-494)||(53544412-53544476)
chr3 (440-487)||(38656726-38656773)
chr3 (224-298)||(2701363-2701437)
chr3 (432-481)||(47400191-47400240)
[»] chr5 (4 HSPs)
chr5 (315-487)||(30443739-30443911)
chr5 (614-732)||(7781078-7781196)
chr5 (224-298)||(14165319-14165393)
chr5 (685-730)||(33445197-33445242)
[»] chr4 (2 HSPs)
chr4 (412-487)||(29360279-29360354)
chr4 (432-487)||(36896733-36896788)
[»] chr2 (2 HSPs)
chr2 (412-487)||(4998553-4998628)
chr2 (412-487)||(5014629-5014704)
[»] scaffold0631 (1 HSPs)
scaffold0631 (618-706)||(5659-5747)
[»] chr8 (1 HSPs)
chr8 (423-481)||(8162914-8162972)
[»] scaffold0296 (1 HSPs)
scaffold0296 (434-483)||(1879-1928)


Alignment Details
Target: chr1 (Bit Score: 730; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 18 - 790
Target Start/End: Original strand, 41532262 - 41533032
Alignment:
Q  18 tcatttatattttccaataagttaggatatgtgctttggacaattgatgcaagtgaatcaccacaacttggaatgagcaaatcaggtgggattgtaacct 117  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41532262 tcatttatattttccaataagttaggatatg--ctttggacaattgatgcaagtgaatcaccacaacttggaatgagcaaatcaggtgggattgtaacct 41532359  T
Q  118 ggatatccacatcattactttctcccacactaccatcaccaatacctaatatccaatctgagaaggcctttctctcttccacatctgaatcagaactccc 217  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  41532360 ggatatccacatcattactttctcccacagtaccatcaccaatacctaatatccaatctgagaaggcctttctctcttccacatctgaatcagaactctc 41532459  T
Q  218 agaaagaagcctcatgtttgtagtcaaagttagaacctcacagtaactccagatttttgagaaattgatggtagcttgaacaacatcttctttatttcct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41532460 agaaagaagcctcatgtttgtagtcaaagttagaacctcacagtaactccagatttttgagaaattgatggtagcttgaacaacatcttctctatttcct 41532559  T
Q  318 ttaggcacaactggaagtatctgtcgaaaatctccaccaaacacaaccaccttcccaccaaaaggaatatccattctatcattattataggatctaagaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41532560 ttaggcacaactggaagtatctgtcgaaaatctccaccaaacacaaccacctttccaccaaaaggaatatccattctatcattattataggatctaagaa 41532659  T
Q  418 catcccttaaagtgcgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgatcaattttcttttggcaatcaaattagctaa 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  41532660 catcccttaaagtgcgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaacgatcaattttgttttggcaatcaaattagctaa 41532759  T
Q  518 ataactcttttgttttatttcacatgtagagagttgatcaatatttataggaatagcaaaccttgagtgtgcagttcttcctcctggaatgagtagtgca 617  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41532760 atgactcttttgttttatttcacatgtagagagttgatcaatatttataggaatagcaaaccttgagtgtgcagttcttcctcctggaatgagtagtgca 41532859  T
Q  618 gctatcccacttgaagcaacagttaagacaatttgaccttttgatctcaatgctgctgacatagccctccaaataaaagtcttccctgtgcctccataac 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41532860 gctatcccacttgaagcaacagttaagacaatttgaccttttgatctcaatgctgctgacatagccctccaaataaaagtcttccctgtgcctccataac 41532959  T
Q  718 cataaagaaaaaatatgtcgggtttgtttacaaatacccttgacatgattctatcatatacccttctctgctc 790  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41532960 cataaagaaaaaatatgtcgggtttgttttcaaatacccttgacatgattctatcatatacccttctctgctc 41533032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 432 - 487
Target Start/End: Original strand, 23090357 - 23090412
Alignment:
Q  432 cgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 487  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||||||| |||||    
T  23090357 cgatcaagtgcttcgaaacaatgtttatgcatcatcggcgcttcatcccatatgat 23090412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 440 - 487
Target Start/End: Original strand, 37892624 - 37892671
Alignment:
Q  440 tgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 487  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||    
T  37892624 tgcttcgaaacaatgtttatgcatcattggcgcttcatcccatatgat 37892671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 315 - 385
Target Start/End: Complemental strand, 25225897 - 25225827
Alignment:
Q  315 cctttaggcacaactggaagtatctgtcgaaaatctccaccaaacacaaccaccttcccaccaaaaggaat 385  Q
    |||||||| |||||||| || ||||||||||||||||||||||  || || || || ||||||||||||||    
T  25225897 cctttaggaacaactggtagaatctgtcgaaaatctccaccaagaaccacaactttaccaccaaaaggaat 25225827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 730
Target Start/End: Original strand, 23090589 - 23090656
Alignment:
Q  663 ctcaatgctgctgacatagccctccaaataaaagtcttccctgtgcctccataaccataaagaaaaaa 730  Q
    ||||| || ||||||| ||||||||||||||| |||||||| || || |||||||| || ||||||||    
T  23090589 ctcaaagcagctgacaaagccctccaaataaatgtcttccccgtaccaccataaccgtacagaaaaaa 23090656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 487
Target Start/End: Complemental strand, 29244493 - 29244418
Alignment:
Q  412 taagaacatcccttaaagtgcgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 487  Q
    |||||||||| || ||||  ||||||| |||||||||||||||  | ||||||||||  ||||||||||| |||||    
T  29244493 taagaacatctctcaaagatcgatcaagtgcttcgaaacaatgcgtgtgcatcattgacgcttcatcccatatgat 29244418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 554 - 732
Target Start/End: Complemental strand, 44583545 - 44583367
Alignment:
Q  554 atcaatatttataggaatagcaaaccttgagtgtgcagttcttcctcctggaatgagtagtgcagctatcccacttgaagcaacagttaagacaatttga 653  Q
    ||||| || ||||||||| | ||||||||| ||||||||||||||||| ||||| |  |  |||||||| ||||| || ||||| ||||  ||||| |      
T  44583545 atcaacatgtataggaatggaaaaccttgaatgtgcagttcttcctccaggaatcaacaaagcagctattccactggatgcaactgttagaacaatatct 44583446  T
Q  654 ccttttgatctcaatgctgctgacatagccctccaaataaaagtcttccctgtgcctccataaccataaagaaaaaata 732  Q
    |||||||| |  ||||| ||||||||||||||||||||| ||||||| |||||||| || || |||| |||||||||||    
T  44583445 ccttttgagcgtaatgcagctgacatagccctccaaatataagtctttcctgtgcccccgtagccatgaagaaaaaata 44583367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 413 - 484
Target Start/End: Complemental strand, 30067304 - 30067233
Alignment:
Q  413 aagaacatcccttaaagtgcgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaat 484  Q
    ||||| |||||| ||| | || |||| |||||| ||||| ||||||||||||||||| ||||||||||||||    
T  30067304 aagaatatccctcaaacttcggtcaagtgcttcaaaacagtgtttatgcatcattggcgcttcatcccaaat 30067233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 413 - 484
Target Start/End: Complemental strand, 45136976 - 45136905
Alignment:
Q  413 aagaacatcccttaaagtgcgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaat 484  Q
    ||||| |||||| ||| | || |||| |||||| ||||| ||||||||||||||||| ||||||||||||||    
T  45136976 aagaatatccctcaaacttcggtcaagtgcttcaaaacagtgtttatgcatcattggcgcttcatcccaaat 45136905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 434 - 487
Target Start/End: Complemental strand, 44583665 - 44583612
Alignment:
Q  434 atcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 487  Q
    |||||||||||| ||||||||||||||  ||||||| || ||||||||||||||    
T  44583665 atcaactgcttcaaaacaatgtttatgggtcattggagcctcatcccaaatgat 44583612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 313 - 385
Target Start/End: Complemental strand, 21712604 - 21712532
Alignment:
Q  313 ttcctttaggcacaactggaagtatctgtcgaaaatctccaccaaacacaaccaccttcccaccaaaaggaat 385  Q
    ||||||| || | ||||||||| || ||||||||||||||||| | |||||| || || ||||||||||||||    
T  21712604 ttcctttgggtataactggaagaatttgtcgaaaatctccacctagcacaacaacttttccaccaaaaggaat 21712532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 487
Target Start/End: Complemental strand, 26168158 - 26168111
Alignment:
Q  440 tgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 487  Q
    ||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  26168158 tgcttcgaaacaatgcttgtgcatcattggcgcttcatcccatatgat 26168111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 11643131 - 11643204
Alignment:
Q  224 aagcctcatgtttgtagtcaaagttagaacctcacagtaactccagatttttgagaaattgatggtagcttgaa 297  Q
    ||||||||||||  ||||||| || ||||||||||| |||||||| | ||||||  ||||||| ||||| ||||    
T  11643131 aagcctcatgttcttagtcaaggtaagaacctcacaataactccatagttttgaagaattgatagtagcatgaa 11643204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 579 - 733
Target Start/End: Original strand, 34418167 - 34418321
Alignment:
Q  579 cttgagtgtgcagttcttcctcctggaatgagtagtgcagctatcccacttgaagcaacagttaagacaatttgaccttttgatctcaatgctgctgaca 678  Q
    ||||| ||||| ||||| ||||| || |||||||  |||||||| ||||| || |||||  |||| ||||| | ||||| |||||||||||| |||| ||    
T  34418167 cttgaatgtgcggttctgcctccaggtatgagtaacgcagctatgccactggatgcaactattaaaacaatctcaccttgtgatctcaatgcagctgcca 34418266  T
Q  679 tagccctccaaataaaagtcttccctgtgcctccataaccataaagaaaaaatat 733  Q
    |||||||||| | ||| || ||||||||||| || ||||||||||||||||||||    
T  34418267 tagccctccataaaaatgttttccctgtgccaccgtaaccataaagaaaaaatat 34418321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 329 - 490
Target Start/End: Original strand, 23308142 - 23308303
Alignment:
Q  329 tggaagtatctgtcgaaaatctccaccaaacacaaccaccttcccaccaaaaggaatatccattctatcattattataggatctaagaacatcccttaaa 428  Q
    |||||||||||| |||||||||||||| || |||||||| || || ||||| || ||||||| || |||||||||||||| ||  ||||| ||||| ||     
T  23308142 tggaagtatctggcgaaaatctccacccaaaacaaccacttttcctccaaaggggatatccaatcgatcattattataggttcgtagaacgtccctaaat 23308241  T
Q  429 gtgcgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgatcaa 490  Q
    |  |||||||| || || || || ||  |||| | |||||||||||||||||| ||||||||    
T  23308242 gcacgatcaacagcctcaaagcagtgcctatgaagcattggtgcttcatcccatatgatcaa 23308303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 487
Target Start/End: Original strand, 25972129 - 25972176
Alignment:
Q  440 tgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 487  Q
    |||||| ||||||||||| ||||||||||| ||||||||||| |||||    
T  25972129 tgcttctaaacaatgtttgtgcatcattggcgcttcatcccatatgat 25972176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 487
Target Start/End: Original strand, 25976569 - 25976616
Alignment:
Q  440 tgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 487  Q
    |||||| ||||||||||| ||||||||||| ||||||||||| |||||    
T  25976569 tgcttctaaacaatgtttgtgcatcattggcgcttcatcccatatgat 25976616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 34417912 - 34417973
Alignment:
Q  324 acaactggaagtatctgtcgaaaatctccaccaaacacaaccaccttcccaccaaaaggaat 385  Q
    |||||||||||||| |||||||| ||||| ||||| ||||| || || |||||||| |||||    
T  34417912 acaactggaagtatttgtcgaaagtctcctccaaaaacaacaacttttccaccaaacggaat 34417973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 339 - 484
Target Start/End: Complemental strand, 924854 - 924709
Alignment:
Q  339 tgtcgaaaatctccaccaaacacaaccaccttcccaccaaaaggaatatccattctatcattattataggatctaagaacatcccttaaagtgcgatcaa 438  Q
    ||||||||||| || ||||  ||||| ||||| |||||||||||||||||||  ||| ||  ||| | |  |||||||| |||||| | ||  |||||||    
T  924854 tgtcgaaaatccccgccaagaacaacaacctttccaccaaaaggaatatccaacctaccaccattttggtgtctaagaatatccctcatagaacgatcaa 924755  T
Q  439 ctgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaat 484  Q
      || ||||| ||||||||||||||||| |||||||| ||||||||    
T  924754 gagcctcgaagcaatgtttatgcatcataggtgcttcgtcccaaat 924709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 440 - 487
Target Start/End: Complemental strand, 18255256 - 18255209
Alignment:
Q  440 tgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 487  Q
    |||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  18255256 tgcttcgaaacaatgtttgtgcatcattggcgcttcatcccatatgat 18255209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 413 - 484
Target Start/End: Original strand, 18987307 - 18987378
Alignment:
Q  413 aagaacatcccttaaagtgcgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaat 484  Q
    ||||| |||||| ||| | || |||| |||||| ||||| ||||||||||||||||| ||||||||||||||    
T  18987307 aagaatatccctcaaacttcggtcaagtgcttcaaaacagtgtttatgcatcattggcgcttcatcccaaat 18987378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 430 - 494
Target Start/End: Complemental strand, 53544476 - 53544412
Alignment:
Q  430 tgcgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgatcaatttt 494  Q
    ||||||| | |||||| ||||| |||||||||||||| |||||||||||||| || |||| ||||    
T  53544476 tgcgatctagtgcttcaaaacagtgtttatgcatcataggtgcttcatcccatataatcagtttt 53544412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 487
Target Start/End: Original strand, 38656726 - 38656773
Alignment:
Q  440 tgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 487  Q
    ||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  38656726 tgcttcgaaacaatgcttgtgcatcattggcgcttcatcccatatgat 38656773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 2701437 - 2701363
Alignment:
Q  224 aagcctcatgtttgtagtcaaagttagaacctcacagtaactccagatttttgagaaattgatggtagcttgaac 298  Q
    ||||||||||||  ||||||| || ||||||||||| |||||||| | ||||||  ||||||| ||||| |||||    
T  2701437 aagcctcatgttcttagtcaaggtaagaacctcacaataactccatagttttgaagaattgatagtagcatgaac 2701363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 481
Target Start/End: Original strand, 47400191 - 47400240
Alignment:
Q  432 cgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatccca 481  Q
    ||||||||||| || ||||||||| | |||||||| ||||||||||||||    
T  47400191 cgatcaactgcctcaaaacaatgtatgtgcatcatcggtgcttcatccca 47400240  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 315 - 487
Target Start/End: Original strand, 30443739 - 30443911
Alignment:
Q  315 cctttaggcacaactggaagtatctgtcgaaaatctccaccaaacacaaccaccttcccaccaaaaggaatatccattctatcattattataggatctaa 414  Q
    |||||||| || ||||| || ||||||||||||||||||||||  || || || || |||||||||||||| ||  | ||    |||||||    | |||    
T  30443739 cctttaggaacgactggtagaatctgtcgaaaatctccaccaagaaccacaactttaccaccaaaaggaatgtctgtcctcctgttattatgatctttaa 30443838  T
Q  415 gaacatcccttaaagtgcgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 487  Q
    | ||||||||||| ||||||||||  ||||| || |||||||| |||||||| |||||||| ||||| |||||    
T  30443839 ggacatcccttaaggtgcgatcaagagcttcaaagcaatgtttgtgcatcataggtgcttcgtcccagatgat 30443911  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 614 - 732
Target Start/End: Complemental strand, 7781196 - 7781078
Alignment:
Q  614 tgcagctatcccacttgaagcaacagttaagacaatttgaccttttgatctcaatgctgctgacatagccctccaaataaaagtcttccctgtgcctcca 713  Q
    ||||||||| |||||||||||||| ||||| || |||| |||| ||||||  |  || || ||||| || ||||||| ||| ||||| ||||| || ||     
T  7781196 tgcagctataccacttgaagcaactgttaaaactatttcacctcttgatcgtatcgcagccgacattgctctccaaagaaacgtcttgcctgttccgccg 7781097  T
Q  714 taaccataaagaaaaaata 732  Q
    || ||||| ||||||||||    
T  7781096 tatccatatagaaaaaata 7781078  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 224 - 298
Target Start/End: Original strand, 14165319 - 14165393
Alignment:
Q  224 aagcctcatgtttgtagtcaaagttagaacctcacagtaactccagatttttgagaaattgatggtagcttgaac 298  Q
    ||||||||||||  ||||||| || ||||||||||| |||||||| | ||||||  ||||||| ||||| |||||    
T  14165319 aagcctcatgttcttagtcaaggtaagaacctcacaataactccatagttttgaagaattgatagtagcgtgaac 14165393  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 730
Target Start/End: Complemental strand, 33445242 - 33445197
Alignment:
Q  685 tccaaataaaagtcttccctgtgcctccataaccataaagaaaaaa 730  Q
    |||||| | ||||||||||||| |||||||||||||||| ||||||    
T  33445242 tccaaagataagtcttccctgttcctccataaccataaacaaaaaa 33445197  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 412 - 487
Target Start/End: Original strand, 29360279 - 29360354
Alignment:
Q  412 taagaacatcccttaaagtgcgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 487  Q
    |||||||||| || ||||  ||||||| ||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  29360279 taagaacatctctcaaagatcgatcaagtgcttcgaaacaatgcttgtgcatcattggcgcttcatcccatatgat 29360354  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 432 - 487
Target Start/End: Original strand, 36896733 - 36896788
Alignment:
Q  432 cgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 487  Q
    |||||||  |||||||||||||||||||||||||| || ||||||||||| |||||    
T  36896733 cgatcaagggcttcgaaacaatgtttatgcatcatcggcgcttcatcccatatgat 36896788  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 412 - 487
Target Start/End: Original strand, 4998553 - 4998628
Alignment:
Q  412 taagaacatcccttaaagtgcgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 487  Q
    |||||||||| || ||||  ||||||| ||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  4998553 taagaacatctctcaaagatcgatcaagtgcttcgaaacaatgcttgtgcatcattggcgcttcatcccatatgat 4998628  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 412 - 487
Target Start/End: Original strand, 5014629 - 5014704
Alignment:
Q  412 taagaacatcccttaaagtgcgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 487  Q
    |||||||||| || ||||  ||||||| ||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  5014629 taagaacatctctcaaagatcgatcaagtgcttcgaaacaatgcttgtgcatcattggcgcttcatcccatatgat 5014704  T

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Target: scaffold0631 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0631
Description:

Target: scaffold0631; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 618 - 706
Target Start/End: Original strand, 5659 - 5747
Alignment:
Q  618 gctatcccacttgaagcaacagttaagacaatttgaccttttgatctcaatgctgctgacatagccctccaaataaaagtcttccctgt 706  Q
    ||||| |||||||| || || ||||  |||||||| ||||| ||||||||||| | ||||||||| |||||||||||||| || |||||    
T  5659 gctataccacttgacgctactgttagaacaatttgtcctttggatctcaatgcagatgacatagctctccaaataaaagtttttcctgt 5747  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 423 - 481
Target Start/End: Complemental strand, 8162972 - 8162914
Alignment:
Q  423 cttaaagtgcgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatccca 481  Q
    ||||| |||| |||||| ||||| || |||||||| |||||||| ||||||||||||||    
T  8162972 cttaaggtgcaatcaacagcttcaaagcaatgtttgtgcatcataggtgcttcatccca 8162914  T

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Target: scaffold0296 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0296
Description:

Target: scaffold0296; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 483
Target Start/End: Original strand, 1879 - 1928
Alignment:
Q  434 atcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaa 483  Q
    |||||||||||| ||||||||||||||  ||||||| || ||||||||||    
T  1879 atcaactgcttcaaaacaatgtttatgggtcattggagcctcatcccaaa 1928  T

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