View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15442_low_10 (Length: 443)

Name: NF15442_low_10
Description: NF15442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15442_low_10
NF15442_low_10
[»] chr4 (1 HSPs)
chr4 (48-432)||(11118672-11119057)
[»] chr3 (1 HSPs)
chr3 (1-155)||(8523841-8523995)
[»] chr5 (8 HSPs)
chr5 (1-432)||(42124033-42124465)
chr5 (9-156)||(34239703-34239850)
chr5 (20-159)||(41571167-41571306)
chr5 (58-156)||(34232000-34232098)
chr5 (48-142)||(42129699-42129793)
chr5 (68-145)||(41712756-41712833)
chr5 (53-164)||(41432340-41432451)
chr5 (120-167)||(41445148-41445195)
[»] chr2 (3 HSPs)
chr2 (58-171)||(12249269-12249382)
chr2 (191-265)||(32681369-32681443)
chr2 (52-102)||(32681216-32681266)
[»] chr6 (2 HSPs)
chr6 (54-238)||(25522213-25522397)
chr6 (340-382)||(25522500-25522542)


Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 48 - 432
Target Start/End: Complemental strand, 11119057 - 11118672
Alignment:
Q  48 tctaagcaacaacatgctacaaggcaatattccagaatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtggtgct 147  Q
    |||||||||||||  ||||||||||||||||||||||| |||||||| ||| ||||| ||| ||  |||||||||||||||||||||||||||||||| |    
T  11119057 tctaagcaacaaccggctacaaggcaatattccagaatgcattttcagcctaacaaagctagatgaactagatctatcatcaaacaacttgagtggtgtt 11118958  T
Q  148 gtcaattttaaactcttctccaaatttgatgtactggaaattttatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatgacacttata 247  Q
    |||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11118957 gtcaattttaaactcttctccaaatttgctgacctggaaattttatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatgtcacttata 11118858  T
Q  248 gttttactaacctacaaatactgaaattat-ttctgtcatattgattgagtttcacaacttacaaggagatttcccacgtttgcaacatctgcatctttc 346  Q
    |||||||||||||||||||||| ||||||| ||||||||  ||||| || |||||||||||||||||||| || ||| |||||  ||||||| |||||||    
T  11118857 gttttactaacctacaaatactcaaattatcttctgtcaacttgatcgaatttcacaacttacaaggagaatttccaagtttgtcacatctggatctttc 11118758  T
Q  347 caataacaaacttaatggaagaatgcccaattggtttcttggaaataatttttggcaatctgtggacctctctcaaaacttgttca 432  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||    
T  11118757 caaaaacaaacttaatggaagaatgcccaattggtttcttggaaatatttattggcaatctgtggacctctctcataacttgttca 11118672  T

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Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 8523995 - 8523841
Alignment:
Q  1 acagggtatatcagtgaaatctcatcatattccatatggtcactaactctaagcaacaacatgctacaaggcaatattccagaatccattttcaacctta 100  Q
    |||||| ||||||| | |||||||||||||||| ||  ||  ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||     
T  8523995 acagggaatatcagcgcaatctcatcatattccttagagtttctatctctaagtaacaacaggctacaaggcaatattccagaatccattttcaaccttg 8523896  T
Q  101 caaacctaaatacactagatctatcatcaaacaacttgagtggtgctgtcaattt 155  Q
    ||||||||| || |||||||||||||||||||||||||||||||| |||||||||    
T  8523895 caaacctaagtagactagatctatcatcaaacaacttgagtggtgttgtcaattt 8523841  T

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Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 42124465 - 42124033
Alignment:
Q  1 acagggtatatcagtgaaatctcatcatattccatatggtcactaactctaagcaacaacatgctacaaggcaatattccagaatccattttcaacctta 100  Q
    |||||| ||||||||||||| |||||||||||  ||      ||||||||||||||||||| |||||||||||||||||| || |||||||||||||| |    
T  42124465 acagggcatatcagtgaaatatcatcatattctttaaacatgctaactctaagcaacaacaggctacaaggcaatattcctgagtccattttcaacctaa 42124366  T
Q  101 caaacctaaatacactagat-ctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctccaaatttg-atgtactggaaattttatccctt 198  Q
    |||| |||  | ||||  || ||||| || ||| |||||||||||  |||||||||| |||||||||||||| ||  |||| || ||||| |||||||||    
T  42124365 caaaactatct-cacttaattctatcttcgaacgacttgagtggtcttgtcaattttcaactcttctccaaacttacatgt-ctagaaatgttatccctt 42124268  T
Q  199 tcaaggaatagtcagttgtcactaaaattcgaatccaatgacacttatagttttactaacctacaaatactgaaattat-ttctgtcatattgattgagt 297  Q
    ||| |||||||||| || || ||||| || |||||||||| || |||||||||| ||| ||||||| || || |||| | ||||||||  |||||  | |    
T  42124267 tcatggaatagtcaattatctctaaattttgaatccaatgtcaattatagtttttctagcctacaagtattggaattgtcttctgtcaatttgatcaaat 42124168  T
Q  298 ttcacaacttacaaggagatttcccacgtttgcaacatctgcatctttccaataacaaacttaatggaagaatgcccaattggtttcttggaaataattt 397  Q
    | || || ||||||||||| |||  |  ||||  |   ||  || ||||  ||||||||||| |||||||||||||||||||||| |||| ||| ||||     
T  42124167 tccataatttacaaggagaattcttagatttgatatcacttgatatttctgataacaaacttcatggaagaatgcccaattggttacttgaaaaaaattc 42124068  T
Q  398 ttggcaatctgtggacctctctcaaaacttgttca 432  Q
     | || || | || |||||||||||||||||||||    
T  42124067 attgctatttttgaacctctctcaaaacttgttca 42124033  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 34239703 - 34239850
Alignment:
Q  9 tatcagtgaaatctcatcatattccatatggtcactaactctaagcaacaacatgctacaaggcaatattccagaatccattttcaaccttacaaaccta 108  Q
    ||||||||||||||||||||||||| ||  ||  ||| ||||| ||||||||| |||||||||  |||||||| | || |||||||||||| ||||||||    
T  34239703 tatcagtgaaatctcatcatattccttagagtatctatctctatgcaacaacaagctacaaggtgatattccaaattcaattttcaaccttgcaaaccta 34239802  T
Q  109 aatacactagatctatcatcaaacaacttgagtggtgctgtcaatttt 156  Q
    | |||||||  |||||||||||||||||||||||||| ||||||||||    
T  34239803 attacactatgtctatcatcaaacaacttgagtggtgttgtcaatttt 34239850  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 41571167 - 41571306
Alignment:
Q  20 tctcatcatattccatatggtcactaactctaagcaacaacatgctacaaggcaatattccagaatccattttcaaccttacaaacctaaatacactaga 119  Q
    |||||||||||||  | ||||  ||||  ||| ||| ||||| |||||||||| ||||||| ||||| ||||||||||||  |||||||| |||||||      
T  41571167 tctcatcatattctttgtggtatctaaaactatgcagcaacaagctacaaggcgatattcctgaatctattttcaaccttgtaaacctaactacactatg 41571266  T
Q  120 tctatcatcaaacaacttgagtggtgctgtcaattttaaa 159  Q
     || |||||||||||||||||||||  |||||||||||||    
T  41571267 cctgtcatcaaacaacttgagtggtattgtcaattttaaa 41571306  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 58 - 156
Target Start/End: Original strand, 34232000 - 34232098
Alignment:
Q  58 aacatgctacaaggcaatattccagaatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtggtgctgtcaatttt 156  Q
    |||| |||||||||||||||||||||||| ||||||||||||  |||  ||  |  | |||||||||||||||||||||||||||||| ||||||||||    
T  34232000 aacaagctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaatttt 34232098  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 42129793 - 42129699
Alignment:
Q  48 tctaagcaacaacatgctacaaggcaatattccagaatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtg 142  Q
    |||||||  ||||| ||||||||||||||||||| |||| |||||||||||| ||||| ||| |   ||||||||||||||||||||||||||||    
T  42129793 tctaagcggcaacaagctacaaggcaatattccaaaatctattttcaaccttgcaaacttaactttgctagatctatcatcaaacaacttgagtg 42129699  T

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Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 41712756 - 41712833
Alignment:
Q  68 aaggcaatattccagaatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtggtg 145  Q
    ||||||||||||||||||| |||||||| |||| |||||||| || |||||| ||||||||||||||||| |||||||    
T  41712756 aaggcaatattccagaatcaattttcaaacttataaacctaactagactagacctatcatcaaacaacttcagtggtg 41712833  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 164
Target Start/End: Complemental strand, 41432451 - 41432340
Alignment:
Q  53 gcaacaacatgctacaaggcaatattccagaatccattttcaaccttacaaacctaaatacactag-atctatcatcaaacaacttgagtggtgctgtca 151  Q
    ||||||||||| ||||||| ||||||||||||||  |||||||||||  |||||| | || ||| |  |||||| ||||| ||||||||||||  |||||    
T  41432451 gcaacaacatgttacaaggaaatattccagaatcacttttcaaccttgtaaaccttacta-acttgtgtctatcttcaaataacttgagtggttttgtca 41432353  T
Q  152 attttaaactctt 164  Q
    |||||||||||||    
T  41432352 attttaaactctt 41432340  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 41445195 - 41445148
Alignment:
Q  120 tctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctc 167  Q
    |||||| ||||| ||||||||||||  |||||||||||||||||||||    
T  41445195 tctatcttcaaataacttgagtggttttgtcaattttaaactcttctc 41445148  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 58 - 171
Target Start/End: Complemental strand, 12249382 - 12249269
Alignment:
Q  58 aacatgctacaaggcaatattccagaatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtggtgctgtcaatttta 157  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||| ||||| || ||||||| |||||||||||||||||||||||| |||  |||||     
T  12249382 aacaagctacaaggcaatattccaaaatccattttcaaccttacaaccctaactagactagatttatcatcaaacaacttgagtggtgttgttgattttc 12249283  T
Q  158 aactcttctccaaa 171  Q
    ||||||| ||||||    
T  12249282 aactcttttccaaa 12249269  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 265
Target Start/End: Original strand, 32681369 - 32681443
Alignment:
Q  191 tatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatgacacttatagttttactaacctacaaa 265  Q
    |||| |||||| |||||||||| ||||||||||| || |||||||||| || ||||| |||| || |||||||||    
T  32681369 tatctctttcatggaatagtcaattgtcactaaactttgaatccaatgtcagttatacttttccttacctacaaa 32681443  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 32681216 - 32681266
Alignment:
Q  52 agcaacaacatgctacaaggcaatattccagaatccattttcaaccttaca 102  Q
    |||||||||| |||||||||||||||| |||||||  |||| |||||||||    
T  32681216 agcaacaacaagctacaaggcaatatttcagaatctgtttttaaccttaca 32681266  T

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Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 54 - 238
Target Start/End: Original strand, 25522213 - 25522397
Alignment:
Q  54 caacaacatgctacaaggcaatattccagaatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtggtgctgtcaat 153  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||  |||  |||||| | |||| |||||||||||  |||||||    
T  25522213 caacaacaagctacaaggcaatattccagaatccattttcaatcttacaaacctaactaatctaattctatctttaaacgacttgagtggttttgtcaat 25522312  T
Q  154 tttaaactcttctccaaatttgatgtactggaaattttatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatg 238  Q
    ||| ||| ||| |||||| ||      ||   | |||||||||||||| |||||| ||| ||||||||||| |||||||||||||    
T  25522313 tttcaacacttttccaaacttacaaatcttcgatttttatccctttcatggaatactcaattgtcactaaacttcgaatccaatg 25522397  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 25522500 - 25522542
Alignment:
Q  340 atctttccaataacaaacttaatggaagaatgcccaattggtt 382  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  25522500 atctttccaataacaaacttgatggaagaatgcccaattggtt 25522542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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