View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15442_low_11 (Length: 422)
Name: NF15442_low_11
Description: NF15442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15442_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 23344214 - 23343819
Alignment:
| Q |
18 |
gtaactgtttctgcagtttttcagtcttgaccgtccgatctaaaccgatgaagatcgtttaaacttgattttgttattgtgtaatctgaattatccgatc |
117 |
Q |
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| T |
23344214 |
gtaactgtttctgcagtttttcagtcttgaccgtccgatctaaaccgatgaagatcgtttaaacttgattttgttattgtgtaatctgaattgtccgatc |
23344115 |
T |
|
| Q |
118 |
tcaaattaacggtcaagattgtttactgcatgtaaatatgtgtttctccttaagcatggctgtaataaatctcaagagtaattgttatctatgtttgtgc |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23344114 |
tcaaattaacggtcaagattttttactgcatgtaaatatgtgtttctctttaagcatggctgtaataaatctcaagagtaattgttatctatgtttgtgc |
23344015 |
T |
|
| Q |
218 |
ttttactttaaagaaatgttccaatatagaaatgatatgtttttatatgaatgtaaaatatcaagcacttgttctaatttgtttcaatctgatttggata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23344014 |
ttttactttaaagaaatgttccaatatagaaatgatatgtttttatatgaatgtaaaatatcaagcacttgttctaatttgtttcaatctgatttggata |
23343915 |
T |
|
| Q |
318 |
cctatcattatagcacttaatttcatattttatcagcagccactagttaatggttgaataatctatacataaaactttccaatcagaatagaataa |
413 |
Q |
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| T |
23343914 |
cctatcattatagcacttaatttcatattttatcagcagccactagttaatggttgaataatctatacataaaactttccaatcagaatagaataa |
23343819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 10585750 - 10585699
Alignment:
| Q |
75 |
tttaaacttgattttgttattgtgtaatctgaattatccgatctcaaattaa |
126 |
Q |
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| T |
10585750 |
tttaaattttattttgttattgtgtaatctgagccatccgatctcaaattaa |
10585699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 23713503 - 23713456
Alignment:
| Q |
83 |
tgattttgttattgtgtaatctgaattatccgatctcaaattaacggt |
130 |
Q |
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| T |
23713503 |
tgattttgttattgtgtaatctgaactgtccaatctcagattaacggt |
23713456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 32614342 - 32614399
Alignment:
| Q |
69 |
agatcgtttaaacttgattttgttattgtgtaatctgaattatccgatctcaaattaa |
126 |
Q |
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| T |
32614342 |
agatcgtttaaagttgattttgttattgtgtaatttgatttgtccgatgtcaaattaa |
32614399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 20770239 - 20770280
Alignment:
| Q |
83 |
tgattttgttattgtgtaatctgaattatccgatctcaaatt |
124 |
Q |
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| T |
20770239 |
tgattttgttattgggtaatctgaatcgtccgatctcaaatt |
20770280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 30241591 - 30241519
Alignment:
| Q |
69 |
agatcgtttaaacttgattttgttattgtgtaatctgaattatccgatctcaaattaacggtcaagattgttta |
142 |
Q |
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|||||||||||| ||| ||||||||||||||||||||| | || ||| ||| ||||| ||||||||| ||||| |
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| T |
30241591 |
agatcgtttaaagttg-ttttgttattgtgtaatctgagatgtctgatttcagattaatggtcaagatcgttta |
30241519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 31681975 - 31682027
Alignment:
| Q |
115 |
atctcaaattaacggtcaagattgtttactgcatgtaaatatgtgtttctcct |
167 |
Q |
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||||||||||||| ||||| |||||||| |||||||||| |||| ||| |||| |
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| T |
31681975 |
atctcaaattaactgtcaatattgtttaatgcatgtaaagatgtctttttcct |
31682027 |
T |
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