View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15442_low_13 (Length: 325)

Name: NF15442_low_13
Description: NF15442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15442_low_13
NF15442_low_13
[»] chr3 (1 HSPs)
chr3 (10-325)||(27118108-27118423)
[»] chr8 (1 HSPs)
chr8 (217-325)||(8969311-8969419)
[»] chr1 (3 HSPs)
chr1 (40-182)||(17332215-17332360)
chr1 (228-325)||(6445115-6445212)
chr1 (173-211)||(17331210-17331248)
[»] chr4 (1 HSPs)
chr4 (212-325)||(16074507-16074616)
[»] chr5 (4 HSPs)
chr5 (94-197)||(1831613-1831719)
chr5 (94-197)||(40317080-40317186)
chr5 (94-197)||(41410355-41410461)
chr5 (297-325)||(26503985-26504013)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 325
Target Start/End: Complemental strand, 27118423 - 27118108
Alignment:
Q  10 gcataggttcaaatgaaaaagtagacttatacatttcagttttgttaattgaggagttatataacgaattaaagaacattgattacttaattgaattgat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  27118423 gcataggttcaaatgaaaaagtagacttatacatttcagttttgttaattgaggagttatataacgaattaaagaacattgattattgaattgaattgat 27118324  T
Q  110 aagaaaagctccaatgactaaatgaaaaagaagactttgctttactaagaaaggaaatggaaggattgaggtaactgcataaggaatattaaggtggaaa 209  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27118323 aagaaaagcaccgatgactaaatgaaaaagaagactttgctttactaagaaaggaaatggaaggattgaggtaactgcataaggaatattaaggtggaaa 27118224  T
Q  210 tagggaggagatcctatgcagtgcagtttttgtccagtgaaatctcaaccccatgttttctttgtaataagtgcagttctaatcgttaaaaagaaatgaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  27118223 tagggaggagatcctatgcagtgcagtttttgtccagtgaaatctcaaccccacgttttctttgtaataagttcagttctaatcgttaaaaagaaatgaa 27118124  T
Q  310 tggtgtggatgtgcac 325  Q
    ||||||||||||||||    
T  27118123 tggtgtggatgtgcac 27118108  T

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Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 217 - 325
Target Start/End: Original strand, 8969311 - 8969419
Alignment:
Q  217 gagatcctatgcagtgcagtttttgtccagtgaaatctcaaccccatgttttctttgtaataagtgcagttctaatcgttaaaaagaaatgaatggtgtg 316  Q
    |||||||| | ||||| |||| ||||||| ||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||| ||||||    
T  8969311 gagatcctctccagtgtagttgttgtccaatgaaatctcaaccccatgttttccttgtaataagtacaattctaatcattaaaaagaaatgaagggtgtg 8969410  T
Q  317 gatgtgcac 325  Q
    |||||||||    
T  8969411 gatgtgcac 8969419  T

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Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 40 - 182
Target Start/End: Complemental strand, 17332360 - 17332215
Alignment:
Q  40 acatttcagttttgttaattgaggagt--tatataacgaattaaagaacattgattacttaattgaattgataagaaaagctccaatgactaaatgaaaa 137  Q
    |||||||  |||||||||||  |||||  |||| || |||||||||| ||||||| ||| ||||||||||||||||| ||| |  |||||||||||||||    
T  17332360 acatttcgattttgttaattacggagtattataaaatgaattaaagagcattgatgactgaattgaattgataagaagagcactgatgactaaatgaaaa 17332261  T
Q  138 agaagactttgctttactaagaaaggaa-atggaaggattgaggta 182  Q
    |||||| |||||||||| |||||||||| |||||||||||||||||    
T  17332260 agaagattttgctttaccaagaaaggaatatggaaggattgaggta 17332215  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 325
Target Start/End: Complemental strand, 6445212 - 6445115
Alignment:
Q  228 cagtgcagtttttgtccagtgaaatctcaaccccatgttttctttgtaataagtgcagttctaatcgttaaaaagaaatgaatggtgtggatgtgcac 325  Q
    |||||| |||||||||| | |||||||||||||||| ||||| ||||||| | | ||||| ||||| |||||||||||| |||||  || ||||||||    
T  6445212 cagtgcggtttttgtcctgcgaaatctcaaccccatattttccttgtaatcaatacagttttaatcattaaaaagaaattaatggattgaatgtgcac 6445115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 17331248 - 17331210
Alignment:
Q  173 gattgaggtaactgcataaggaatattaaggtggaaata 211  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  17331248 gattgaggttactgcataaggaatattacggtggaaata 17331210  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 212 - 325
Target Start/End: Original strand, 16074507 - 16074616
Alignment:
Q  212 gggaggagatcctatgcagtgcagtttttgtccagtgaaatctcaaccccatgttttctttgtaataagtgcagttctaatcgttaaaaagaaatgaatg 311  Q
    |||| |||||||| | ||||||| ||||||||| ||||||||||| |||||    ||||| ||||| ||||||||||||||| |||||||||||||||||    
T  16074507 gggaagagatcctctccagtgcattttttgtccggtgaaatctcagccccac---ttctt-gtaatcagtgcagttctaatcattaaaaagaaatgaatg 16074602  T
Q  312 gtgtggatgtgcac 325  Q
    ||||||||||||||    
T  16074603 gtgtggatgtgcac 16074616  T

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Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 94 - 197
Target Start/End: Complemental strand, 1831719 - 1831613
Alignment:
Q  94 acttaattgaattgataagaaa-agctccaatgactaaatgaaaaagaagactttgctttactaagaaaggaaatggaa--ggattgaggtaactgcata 190  Q
    |||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||| |||| |||||||||| | |||  |||||||| ||||||||||    
T  1831719 acttaattgaattgataagaaagagcactaatgactagatgaaaaagaagactttgcgttaccaagaaaggaatttgaaagggattgagctaactgcata 1831620  T
Q  191 aggaata 197  Q
    || ||||    
T  1831619 agtaata 1831613  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 94 - 197
Target Start/End: Complemental strand, 40317186 - 40317080
Alignment:
Q  94 acttaattgaattgataagaaa-agctccaatgactaaatgaaaaagaagactttgctttactaagaaaggaaatggaa--ggattgaggtaactgcata 190  Q
    |||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||| |||| |||||||||| | |||  |||||||| ||||||||||    
T  40317186 acttaattgaattgataagaaagagcactaatgactagatgaaaaagaagactttgcgttaccaagaaaggaatttgaaagggattgagctaactgcata 40317087  T
Q  191 aggaata 197  Q
    || ||||    
T  40317086 agtaata 40317080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 41410355 - 41410461
Alignment:
Q  94 acttaattgaattgataagaaa-agctccaatgactaaatgaaaaagaagactttgctttactaagaaaggaaatggaa--ggattgaggtaactgcata 190  Q
    |||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||| |||| |||||||||| | |||  |||||||| ||||||||||    
T  41410355 acttaattgaattgataagaaagagcactaatgactagatgaaaaagaagactttgcgttaccaagaaaggaatttgaaagggattgagctaactgcata 41410454  T
Q  191 aggaata 197  Q
    || ||||    
T  41410455 agtaata 41410461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 325
Target Start/End: Complemental strand, 26504013 - 26503985
Alignment:
Q  297 aaaaagaaatgaatggtgtggatgtgcac 325  Q
    |||||||||||||||||||||||||||||    
T  26504013 aaaaagaaatgaatggtgtggatgtgcac 26503985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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