View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15442_low_14 (Length: 320)

Name: NF15442_low_14
Description: NF15442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15442_low_14
NF15442_low_14
[»] chr1 (16 HSPs)
chr1 (51-302)||(47996548-47996813)
chr1 (19-52)||(39181162-39181195)
chr1 (19-54)||(33324156-33324191)
chr1 (19-54)||(39181043-39181078)
chr1 (118-160)||(43537197-43537239)
chr1 (19-53)||(46518056-46518090)
chr1 (119-160)||(1062842-1062883)
chr1 (19-52)||(5852684-5852717)
chr1 (19-52)||(6763445-6763478)
chr1 (19-52)||(26059230-26059263)
chr1 (19-52)||(26660640-26660673)
chr1 (19-52)||(27552341-27552374)
chr1 (19-52)||(45242853-45242886)
chr1 (19-52)||(45925355-45925388)
chr1 (24-52)||(4682933-4682961)
chr1 (24-52)||(9135634-9135662)
[»] scaffold0018 (1 HSPs)
scaffold0018 (118-171)||(69977-70030)
[»] chr6 (9 HSPs)
chr6 (19-55)||(10731584-10731620)
chr6 (19-53)||(11989141-11989175)
chr6 (24-54)||(28034009-28034039)
chr6 (19-52)||(10731469-10731502)
chr6 (19-52)||(11989253-11989286)
chr6 (19-52)||(32786227-32786260)
chr6 (24-52)||(3750317-3750345)
chr6 (24-52)||(10644260-10644288)
chr6 (24-52)||(14897043-14897071)
[»] chr8 (11 HSPs)
chr8 (19-54)||(32480307-32480342)
chr8 (19-52)||(17911359-17911392)
chr8 (19-52)||(32480184-32480217)
chr8 (19-52)||(34194556-34194589)
chr8 (19-52)||(34194671-34194704)
chr8 (19-52)||(37922923-37922956)
chr8 (19-52)||(38883942-38883975)
chr8 (24-56)||(7011784-7011816)
chr8 (24-52)||(29007528-29007556)
chr8 (24-52)||(35063576-35063604)
chr8 (24-52)||(40305008-40305036)
[»] chr7 (7 HSPs)
chr7 (19-54)||(27942436-27942471)
chr7 (19-52)||(27940856-27940889)
chr7 (19-52)||(28003289-28003322)
chr7 (19-52)||(33471486-33471519)
chr7 (19-52)||(37066178-37066211)
chr7 (24-52)||(27878838-27878866)
chr7 (24-52)||(27878919-27878947)
[»] chr5 (5 HSPs)
chr5 (19-54)||(19784528-19784563)
chr5 (19-52)||(18942097-18942130)
chr5 (19-52)||(19784634-19784667)
chr5 (19-52)||(26168299-26168332)
chr5 (19-52)||(33696766-33696799)
[»] chr2 (6 HSPs)
chr2 (19-54)||(40340580-40340615)
chr2 (118-160)||(24183985-24184027)
chr2 (18-52)||(39801010-39801044)
chr2 (19-52)||(24971201-24971234)
chr2 (19-52)||(26567632-26567665)
chr2 (19-52)||(40340465-40340498)
[»] chr4 (11 HSPs)
chr4 (118-172)||(25817667-25817721)
chr4 (118-172)||(42504246-42504300)
chr4 (19-52)||(13743969-13744002)
chr4 (115-172)||(16528565-16528622)
chr4 (19-52)||(17659576-17659609)
chr4 (19-52)||(25856121-25856154)
chr4 (19-52)||(30051454-30051487)
chr4 (57-114)||(35364720-35364777)
chr4 (19-52)||(51126216-51126249)
chr4 (118-170)||(30220705-30220756)
chr4 (24-52)||(39466700-39466728)
[»] chr3 (8 HSPs)
chr3 (19-53)||(28791754-28791788)
chr3 (119-172)||(2671905-2671958)
chr3 (19-52)||(8126126-8126159)
chr3 (19-52)||(34205559-34205592)
chr3 (19-52)||(44435170-44435203)
chr3 (19-52)||(50623147-50623180)
chr3 (24-52)||(16607470-16607498)
chr3 (24-52)||(40326554-40326582)
[»] scaffold0200 (1 HSPs)
scaffold0200 (24-52)||(22418-22446)


Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 51 - 302
Target Start/End: Complemental strand, 47996813 - 47996548
Alignment:
Q  51 tacacgagaaaagtatcacgaaaatttctcgagagtataattgctcaacaccttttcttaattacatttg-------------atttccggccaataaga 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||| ||||||||||    
T  47996813 tacacgagaaaagtatcacgaaaatttctcgagagtataattgctcaacaccttttcttaattacatttgattacctcccttaatttccagccaataaga 47996714  T
Q  138 aatttaattggctgaaaccttttttggatcaattccggatnnnnnnnnctct--ctagataaatagcaacgctcctcaataaatttaacacttcacccga 235  Q
    |||||||||| ||||||| ||||||||||||||| |||||        ||||   |||||||||||||| ||| ||| ||||||||||||||||||||||    
T  47996713 aatttaattgactgaaacattttttggatcaatttcggat-aaaaactctctagatagataaatagcaatgcttctcgataaatttaacacttcacccga 47996615  T
Q  236 aaagtaaaataaannnnnnnnnnnnaagattaaaagtaaaacaaatcacttttatgataggatagaa 302  Q
    |||||||||||||            ||||||||||||||||||||||||||||||||||||||||||    
T  47996614 aaagtaaaataaattttttctttttaagattaaaagtaaaacaaatcacttttatgataggatagaa 47996548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 39181162 - 39181195
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||||||||||||||||    
T  39181162 taaaatttgcttatattttgatacggagggagta 39181195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 33324156 - 33324191
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagtaca 54  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33324156 taaaatttgcttatattttgagacggagggagtaca 33324191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 39181078 - 39181043
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagtaca 54  Q
    ||||||||||||||||||||| ||||||||||||||    
T  39181078 taaaatttgcttatattttgagacggagggagtaca 39181043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 160
Target Start/End: Original strand, 43537197 - 43537239
Alignment:
Q  118 ttgatttccggccaataagaaatttaattggctgaaacctttt 160  Q
    |||||||||||| ||||| |||||||||||||||| |||||||    
T  43537197 ttgatttccggcaaataacaaatttaattggctgagacctttt 43537239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 46518056 - 46518090
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagtac 53  Q
    ||||||||||||||||||||| |||||||||||||    
T  46518056 taaaatttgcttatattttgaaacggagggagtac 46518090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 1062883 - 1062842
Alignment:
Q  119 tgatttccggccaataagaaatttaattggctgaaacctttt 160  Q
    |||||| |||||||||| ||||||||||||||||||| ||||    
T  1062883 tgattttcggccaataacaaatttaattggctgaaacatttt 1062842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 5852717 - 5852684
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  5852717 taaaatttgcttatattttgaaacggagggagta 5852684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 6763445 - 6763478
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  6763445 taaaatttgcttatattttgaaacggagggagta 6763478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 26059230 - 26059263
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  26059230 taaaatttgcttatattttgaaacggagggagta 26059263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 26660673 - 26660640
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  26660673 taaaatttgcttatattttgagacggagggagta 26660640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 27552341 - 27552374
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  27552341 taaaatttgcttatattttgagacggagggagta 27552374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 45242853 - 45242886
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  45242853 taaaatttgcttatattttgaaacggagggagta 45242886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 45925355 - 45925388
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    |||| |||||||||||||||||||||||||||||    
T  45925355 taaattttgcttatattttgatacggagggagta 45925388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 4682961 - 4682933
Alignment:
Q  24 tttgcttatattttgatacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  4682961 tttgcttatattttgatacggagggagta 4682933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 9135634 - 9135662
Alignment:
Q  24 tttgcttatattttgatacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  9135634 tttgcttatattttgatacggagggagta 9135662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 69977 - 70030
Alignment:
Q  118 ttgatttccggccaataagaaatttaattggctgaaaccttttttggatcaatt 171  Q
    |||||||||||||||||| |||||||||||||||||||||||| | ||||||||    
T  69977 ttgatttccggccaataacaaatttaattggctgaaaccttttcttgatcaatt 70030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 10731584 - 10731620
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagtacac 55  Q
    ||||||||||||||||||||| |||||||||||||||    
T  10731584 taaaatttgcttatattttgaaacggagggagtacac 10731620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 11989175 - 11989141
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagtac 53  Q
    ||||||||||||||||||||| |||||||||||||    
T  11989175 taaaatttgcttatattttgagacggagggagtac 11989141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 28034039 - 28034009
Alignment:
Q  24 tttgcttatattttgatacggagggagtaca 54  Q
    |||||||||||||||||||||||||||||||    
T  28034039 tttgcttatattttgatacggagggagtaca 28034009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 10731502 - 10731469
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  10731502 taaaatttgcttatattttgaaacggagggagta 10731469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 11989253 - 11989286
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  11989253 taaaatttgcttatattttgaaacggagggagta 11989286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 32786227 - 32786260
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  32786227 taaaatttgcttatattttgaaacggagggagta 32786260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 3750317 - 3750345
Alignment:
Q  24 tttgcttatattttgatacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  3750317 tttgcttatattttgatacggagggagta 3750345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 10644288 - 10644260
Alignment:
Q  24 tttgcttatattttgatacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  10644288 tttgcttatattttgatacggagggagta 10644260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 14897071 - 14897043
Alignment:
Q  24 tttgcttatattttgatacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  14897071 tttgcttatattttgatacggagggagta 14897043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 32480307 - 32480342
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagtaca 54  Q
    ||||||||||||||||||||| ||||||||||||||    
T  32480307 taaaatttgcttatattttgaaacggagggagtaca 32480342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 17911392 - 17911359
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  17911392 taaaatttgcttatattttgagacggagggagta 17911359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 32480217 - 32480184
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  32480217 taaaatttgcttatattttgagacggagggagta 32480184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 34194589 - 34194556
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  34194589 taaaatttgcttatattttgaaacggagggagta 34194556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 34194671 - 34194704
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  34194671 taaaatttgcttatattttgaaacggagggagta 34194704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 37922923 - 37922956
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  37922923 taaaatttgcttatattttgaaacggagggagta 37922956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 38883975 - 38883942
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  38883975 taaaatttgcttatattttgaaacggagggagta 38883942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 7011816 - 7011784
Alignment:
Q  24 tttgcttatattttgatacggagggagtacacg 56  Q
    |||||||||||||||| ||||||||||||||||    
T  7011816 tttgcttatattttgaaacggagggagtacacg 7011784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 29007528 - 29007556
Alignment:
Q  24 tttgcttatattttgatacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  29007528 tttgcttatattttgatacggagggagta 29007556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 35063576 - 35063604
Alignment:
Q  24 tttgcttatattttgatacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  35063576 tttgcttatattttgatacggagggagta 35063604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 40305036 - 40305008
Alignment:
Q  24 tttgcttatattttgatacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  40305036 tttgcttatattttgatacggagggagta 40305008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 27942436 - 27942471
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagtaca 54  Q
    ||||||||||||||||||||| ||||||||||||||    
T  27942436 taaaatttgcttatattttgaaacggagggagtaca 27942471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 27940856 - 27940889
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  27940856 taaaatttgcttatattttgaaacggagggagta 27940889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 28003289 - 28003322
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  28003289 taaaatttgcttatattttgaaacggagggagta 28003322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 33471519 - 33471486
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  33471519 taaaatttgcttatattttgagacggagggagta 33471486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 37066211 - 37066178
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  37066211 taaaatttgcttatattttgagacggagggagta 37066178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 27878866 - 27878838
Alignment:
Q  24 tttgcttatattttgatacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  27878866 tttgcttatattttgatacggagggagta 27878838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 27878919 - 27878947
Alignment:
Q  24 tttgcttatattttgatacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  27878919 tttgcttatattttgatacggagggagta 27878947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 19784563 - 19784528
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagtaca 54  Q
    ||||||||||||||||||||| ||||||||||||||    
T  19784563 taaaatttgcttatattttgaaacggagggagtaca 19784528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 18942097 - 18942130
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||    
T  18942097 taaaatttgcttatatttagatacggagggagta 18942130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 19784634 - 19784667
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  19784634 taaaatttgcttatattttgaaacggagggagta 19784667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 26168299 - 26168332
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  26168299 taaaatttgcttatattttgaaacggagggagta 26168332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 33696766 - 33696799
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  33696766 taaaatttgcttatattttgaaacggagggagta 33696799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 40340580 - 40340615
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagtaca 54  Q
    ||||||||||||||||||||| ||||||||||||||    
T  40340580 taaaatttgcttatattttgaaacggagggagtaca 40340615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 160
Target Start/End: Complemental strand, 24184027 - 24183985
Alignment:
Q  118 ttgatttccggccaataagaaatttaattggctgaaacctttt 160  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||    
T  24184027 ttgagttccggcaaataataaatttaattggctgaaacctttt 24183985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 39801010 - 39801044
Alignment:
Q  18 ttaaaatttgcttatattttgatacggagggagta 52  Q
    |||||||||||||||||||||| ||||||||||||    
T  39801010 ttaaaatttgcttatattttgagacggagggagta 39801044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 24971234 - 24971201
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  24971234 taaaatttgcttatattttgaaacggagggagta 24971201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 26567665 - 26567632
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  26567665 taaaatttgcttatattttgaaacggagggagta 26567632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 40340498 - 40340465
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  40340498 taaaatttgcttatattttgaaacggagggagta 40340465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 25817721 - 25817667
Alignment:
Q  118 ttgatttccggccaataagaaatttaattggctgaaaccttttttggatcaattc 172  Q
    |||||||||| | ||||| |||||||||||||||| ||||||| | |||||||||    
T  25817721 ttgatttccgtcaaataacaaatttaattggctgagaccttttcttgatcaattc 25817667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 42504246 - 42504300
Alignment:
Q  118 ttgatttccggccaataagaaatttaattggctgaaaccttttttggatcaattc 172  Q
    |||||||||||| ||||| |||||||||||| ||||| ||||| | |||||||||    
T  42504246 ttgatttccggcaaataacaaatttaattggttgaaatcttttcttgatcaattc 42504300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 13743969 - 13744002
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  13743969 taaaatttgcttatattttgagacggagggagta 13744002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 16528622 - 16528565
Alignment:
Q  115 catttgatttccggccaataagaaatttaattggctgaaaccttttttggatcaattc 172  Q
    ||||||||||||| | ||||| |||||||||||||||| ||||| | | |||||||||    
T  16528622 catttgatttccgacaaataacaaatttaattggctgagaccttctattgatcaattc 16528565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 17659576 - 17659609
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  17659576 taaaatttgcttatattttgagacggagggagta 17659609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 25856121 - 25856154
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  25856121 taaaatttgcttatattttgaaacggagggagta 25856154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 30051454 - 30051487
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  30051454 taaaatttgcttatattttgagacggagggagta 30051487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 35364777 - 35364720
Alignment:
Q  57 agaaaagtatcacgaaaatttctcgagagtataattgctcaacaccttttcttaatta 114  Q
    ||||||||||||||||||| || ||| |||||||||  |||||| |||| ||||||||    
T  35364777 agaaaagtatcacgaaaatatcccgatagtataattattcaacatctttccttaatta 35364720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 51126216 - 51126249
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  51126216 taaaatttgcttatattttgagacggagggagta 51126249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 30220756 - 30220705
Alignment:
Q  118 ttgatttccggccaataagaaatttaattggctgaaaccttttttggatcaat 170  Q
    |||||||||||||||||| ||| |||||||| ||||||||||| | |||||||    
T  30220756 ttgatttccggccaataacaaaattaattgg-tgaaaccttttcttgatcaat 30220705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 39466728 - 39466700
Alignment:
Q  24 tttgcttatattttgatacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  39466728 tttgcttatattttgatacggagggagta 39466700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 28791754 - 28791788
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagtac 53  Q
    ||||||||||||||||||||| |||||||||||||    
T  28791754 taaaatttgcttatattttgaaacggagggagtac 28791788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 2671958 - 2671905
Alignment:
Q  119 tgatttccggccaataagaaatttaattggctgaaaccttttttggatcaattc 172  Q
    |||||| | |||||||| |||||||||||||||| ||||||| | |||||||||    
T  2671958 tgattttcagccaataacaaatttaattggctgacaccttttcttgatcaattc 2671905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 8126159 - 8126126
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  8126159 taaaatttgcttatattttgaaacggagggagta 8126126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 34205592 - 34205559
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  34205592 taaaatttgcttatattttgaaacggagggagta 34205559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 44435203 - 44435170
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  44435203 taaaatttgcttatattttgagacggagggagta 44435170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 50623147 - 50623180
Alignment:
Q  19 taaaatttgcttatattttgatacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  50623147 taaaatttgcttatattttgaaacggagggagta 50623180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 16607470 - 16607498
Alignment:
Q  24 tttgcttatattttgatacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  16607470 tttgcttatattttgatacggagggagta 16607498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 40326554 - 40326582
Alignment:
Q  24 tttgcttatattttgatacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  40326554 tttgcttatattttgatacggagggagta 40326582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 22418 - 22446
Alignment:
Q  24 tttgcttatattttgatacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  22418 tttgcttatattttgatacggagggagta 22446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University