View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15442_low_19 (Length: 247)
Name: NF15442_low_19
Description: NF15442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15442_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 55664185 - 55663953
Alignment:
| Q |
1 |
tagttggtttatttaccgaaaaagcactctgaactctagcttttatgtat----gttgcaggctgttattgaagctggtctaattgctcccctagtaaat |
96 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55664185 |
tagttggcttatttaccgaaaaagcactctgaactctagcttttatgtatatatgttgcaggctgttattgaagctggtctaattgctcccctagtaaat |
55664086 |
T |
|
| Q |
97 |
cttcttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55664085 |
cttcttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagt |
55663986 |
T |
|
| Q |
197 |
tatataattttaattgttatttctggccctact |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
55663985 |
tatataattttaattgttatttctggccctact |
55663953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 52983474 - 52983261
Alignment:
| Q |
1 |
tagttggtttatttaccgaaaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaagctggtctaattgctcccctagtaaatcttc |
100 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
52983474 |
tagttggcttatttaccgaaaaagcgctatgaactctaccttttatgtatgatacaggctgttattgaagctggtctgattgctcccctagtcaatcttc |
52983375 |
T |
|
| Q |
101 |
ttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagttata |
200 |
Q |
| |
|
||||| ||||||| ||||| || |||||||||||||||||||| | | ||||||||| | | | ||||||| |||||||||||||||||||| ||| |
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|
| T |
52983374 |
ttcaatatgccgagtttgacattaaaaaagaagctgcatgggcactctctaatgctacgtttagtggtacccctgagcaaatcaagtatgtga----ata |
52983279 |
T |
|
| Q |
201 |
taattttaattgttattt |
218 |
Q |
| |
|
|| ||||||||||||||| |
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|
| T |
52983278 |
tatttttaattgttattt |
52983261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 55636862 - 55637038
Alignment:
| Q |
19 |
aaaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaagctggtctaattgctcccctagtaaatcttcttcaaaatgccgattttg |
118 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||| |||||||||||||||||||| |||| ||||| |||||||| |||||||||||||||||||| |||| |
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|
| T |
55636862 |
aaaatgcactctgaactctaccttttatgtatgatgcaggctgttattgaagctagtctgattgcccccctagtcaatcttcttcaaaatgccgagtttg |
55636961 |
T |
|
| Q |
119 |
aagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaag |
195 |
Q |
| |
|
| || ||||||||||||||||||| | ||||||| ||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
55636962 |
acattgcaaaagaagctgcatgggcactctttaatgttacatctggtggtacccatgagcaaatcaagtatgtgaag |
55637038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 55619586 - 55619396
Alignment:
| Q |
9 |
ttatttaccgaaaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaagctggtctaattgctcccctagtaaatcttcttcaaaat |
108 |
Q |
| |
|
||||||||||||||||| | ||||||| | ||||||||||| ||||||||||||| |||||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
55619586 |
ttatttaccgaaaaagcgttgtgaactcaaccttttatgtataatgcaggctgttatcaaagctggtctgattgctcccctagtcaatcttcttcaaaat |
55619487 |
T |
|
| Q |
109 |
gccgattttgaagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagttat |
199 |
Q |
| |
|
||||| ||| || |||||||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
55619486 |
gccgagcttgcgattaaaaaagaagctgcatgggcactccgtaatgctacatctgatggtactcatgagcaaatcaagtatgtgaagttat |
55619396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 55626890 - 55626700
Alignment:
| Q |
9 |
ttatttaccgaaaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaagctggtctaattgctcccctagtaaatcttcttcaaaat |
108 |
Q |
| |
|
||||||||||||||||| | ||||||| | ||||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
55626890 |
ttatttaccgaaaaagcgttgtgaactcaaccttttatgtataatgcaggctgttatcgaagctggtctgattgctcccctagtcaatcttcttcaaaat |
55626791 |
T |
|
| Q |
109 |
gccgattttgaagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagttat |
199 |
Q |
| |
|
||||| ||| || |||||||||||||||| ||| | |||||||||||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
55626790 |
gccgagcttgcgattaaaaaagaagctgcatgtgcactccgtaatgctacatctgatggtactcatgagcaaatcaagtatgtgaagttat |
55626700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 55657936 - 55657746
Alignment:
| Q |
9 |
ttatttaccgaaaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaagctggtctaattgctcccctagtaaatcttcttcaaaat |
108 |
Q |
| |
|
||||||||||||||||| | ||||||| | ||||||||||| ||||||||||||| |||||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
55657936 |
ttatttaccgaaaaagcgttgtgaactcaaccttttatgtataatgcaggctgttatcaaagctggtctgattgctcccctagtcaatcttcttcaaaat |
55657837 |
T |
|
| Q |
109 |
gccgattttgaagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagttat |
199 |
Q |
| |
|
||||| ||| || |||||||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
55657836 |
gccgagcttgcgattaaaaaagaagctgcatgggcactccgtaatgctacatctgatggtactcatgagcaaatcaagtatgtgaagttat |
55657746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 54861353 - 54861159
Alignment:
| Q |
20 |
aaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaagctggtctaattgctcccctagtaaatcttcttcaaaatgccgattttga |
119 |
Q |
| |
|
|||||| |||||||||||| ||| |||||| | |||||||||| |||||||||||| | |||||||||||||| ||||||||||||||||| || ||||| |
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|
| T |
54861353 |
aaaagcgctctgaactctaccttatatgtacggtgcaggctgtcattgaagctggtttgattgctcccctagtcaatcttcttcaaaatgctgagtttga |
54861254 |
T |
|
| Q |
120 |
agttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagttatataattttaattgttattt |
218 |
Q |
| |
|
|| |||||||||||||||||||| | |||||||||||| || |||||||| |||||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
54861253 |
cattaaaaaagaagctgcatgggcactcactaatgctacatcaggtggtacccacgagcaaatcaagtaggtgaagttat----ttttaattgttattt |
54861159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 54629837 - 54630050
Alignment:
| Q |
1 |
tagttggtttatttaccgaaaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaagctggtctaattgctcccctagtaaatcttc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
54629837 |
tagttggcttatttaccgaaaaagcactctaaactctaccttttatgcattacgcaggctgttattgaagctggtctgattgctcccctagtcaatcttc |
54629936 |
T |
|
| Q |
101 |
ttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagttata |
200 |
Q |
| |
|
|||||||||| || ||||| || ||| |||| |||| |||| | ||||| ||||||||| |||||||| ||||| |||||||| |||| ||||| |
|
|
| T |
54629937 |
ttcaaaatgcagagtttgacattacaaaggaagttgcacaggcactcactaatgttacatctggtggtacccacgagcatatcaagtaggtgatgttat- |
54630035 |
T |
|
| Q |
201 |
taattttaattgttattt |
218 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
54630036 |
---ttttaattgttattt |
54630050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 189
Target Start/End: Complemental strand, 3671489 - 3671355
Alignment:
| Q |
55 |
caggctgttattgaagctggtctaattgctcccctagtaaatcttcttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaatg |
154 |
Q |
| |
|
||||||||||||||||||||||| ||||| || || || ||||||||||||||||| || ||||| | ||| ||||| ||||||||| | | ||||| |
|
|
| T |
3671489 |
caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg |
3671390 |
T |
|
| Q |
155 |
ctacatctggcggtacccatgagcaaatcaagtat |
189 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
3671389 |
ctacatctggcagtacccatgagcaaatcgagtat |
3671355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 192
Target Start/End: Complemental strand, 50190503 - 50190364
Alignment:
| Q |
53 |
tgcaggctgttattgaagctggtctaattgctcccctagtaaatcttcttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaa |
152 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||| || || | |||||||||||||| || ||||| || |||||||||||||||||||| || || |
|
|
| T |
50190503 |
tgcaggctgttattgatgccggtcttattgctccacttgtcagacttcttcaaaatgcagagtttgacattaaaaaagaagctgcatgggcaataacaaa |
50190404 |
T |
|
| Q |
153 |
tgctacatctggcggtacccatgagcaaatcaagtatgtg |
192 |
Q |
| |
|
||||||| |||| || ||||||||| ||||||||||| |
|
|
| T |
50190403 |
tgctacagctggtggagatcatgagcaagtcaagtatgtg |
50190364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 51316242 - 51316305
Alignment:
| Q |
42 |
tttatgtatgttgcaggctgttattgaagctggtctaattgctcccctagtaaatcttcttcaa |
105 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
51316242 |
tttatgtacgatgcaggctgttattgaagctggtctcattgctcccctggtcgatcttcttcaa |
51316305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 42 - 196
Target Start/End: Original strand, 13403292 - 13403446
Alignment:
| Q |
42 |
tttatgtatgttgcaggctgttattgaagctggtctaattgctcccctagtaaatcttcttcaaaatgccgattttgaagttcaaaaagaagctgcatgg |
141 |
Q |
| |
|
|||||||||| || |||||||||||||||| || || |||||||| || || |||||||||||||||||||| ||||| || ||||||||||||||||| |
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|
| T |
13403292 |
tttatgtatgatgtaggctgttattgaagccggactgattgctcctctggtcaatcttcttcaaaatgccgaatttgacattaaaaaagaagctgcatgg |
13403391 |
T |
|
| Q |
142 |
gcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagt |
196 |
Q |
| |
|
||| | | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13403392 |
gcactctccaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagt |
13403446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 9891129 - 9891323
Alignment:
| Q |
1 |
tagttggtttatttaccgaaaaagcactctgaactctagcttttatgt--atgttgcaggctgttattgaagctggtctaattgctcccctagtaaatct |
98 |
Q |
| |
|
|||||| ||||||| |||||| || ||||||||||| ||||||||| ||| ||||||||||||||||||||||||| ||||| || || || ||||| |
|
|
| T |
9891129 |
tagttgttttatttttcgaaaaggccgtctgaactctaccttttatgtgtatgatgcaggctgttattgaagctggtctgattgcccctctggtcaatct |
9891228 |
T |
|
| Q |
99 |
tcttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtga |
193 |
Q |
| |
|
|||||||||||| || ||||| | ||| ||||| ||||||||| | | |||||||||||||||| ||||||||||||||||| |||| |||| |
|
|
| T |
9891229 |
tcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatgctacatctggcagtacccatgagcaaatcgagtacgtga |
9891323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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