View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15442_low_21 (Length: 239)

Name: NF15442_low_21
Description: NF15442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15442_low_21
NF15442_low_21
[»] chr5 (6 HSPs)
chr5 (1-221)||(3621915-3622135)
chr5 (161-218)||(3622240-3622297)
chr5 (161-218)||(3622365-3622422)
chr5 (162-215)||(17250506-17250559)
chr5 (66-104)||(3622153-3622191)
chr5 (161-213)||(15837737-15837789)
[»] chr4 (2 HSPs)
chr4 (161-216)||(52198346-52198401)
chr4 (161-218)||(36498637-36498694)
[»] chr6 (3 HSPs)
chr6 (161-218)||(6793490-6793547)
chr6 (161-205)||(28067321-28067365)
chr6 (161-217)||(32267056-32267112)
[»] chr8 (3 HSPs)
chr8 (162-217)||(41951181-41951236)
chr8 (161-205)||(28008145-28008189)
chr8 (161-205)||(28065448-28065492)
[»] chr7 (4 HSPs)
chr7 (164-218)||(6983119-6983173)
chr7 (161-214)||(42691107-42691160)
chr7 (161-217)||(30880474-30880530)
chr7 (161-218)||(43375702-43375759)
[»] chr3 (2 HSPs)
chr3 (161-214)||(52404693-52404746)
chr3 (161-209)||(27825056-27825104)
[»] chr2 (4 HSPs)
chr2 (161-218)||(21835982-21836039)
chr2 (163-218)||(14818704-14818759)
chr2 (161-194)||(8209313-8209346)
chr2 (161-217)||(21100015-21100071)
[»] chr1 (4 HSPs)
chr1 (161-218)||(4213878-4213935)
chr1 (161-214)||(17368434-17368487)
chr1 (161-218)||(49315772-49315829)
chr1 (161-195)||(37719063-37719097)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3621915 - 3622135
Alignment:
Q  1 ttttatggtctgatggtgtgcaatagttgaaaatttatgattagtctcataacttatctattatagaaaatacttgagtgactttacattttagtaactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3621915 ttttatggtctgatggtgtgcaatagttgaaaatttatgattagtctcataacttatctattatagaaaatacttgagtgactttacattttagtaactt 3622014  T
Q  101 tggtgaatgcttgcaattccttccaagtttccaaagtcactgaagtgtgaatgctatggtataaattattttgatgagagataattattgattagaaaag 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3622015 tggtgaatgcttgcaatttcttccaagtttccaaagtcactgaagtgtgaatgctatggtataaattattttgatgagagataattattgattagaaaag 3622114  T
Q  201 agatagagataaagtcactaa 221  Q
    ||||||||| |||||||||||    
T  3622115 agatagagacaaagtcactaa 3622135  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 3622240 - 3622297
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagatagagataaagtcac 218  Q
    ||||||||||||||||||||| |||||||| |||||| ||||||||||| ||||||||    
T  3622240 ataaattattttgatgagagaaaattattggttagaagagagatagagacaaagtcac 3622297  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 3622365 - 3622422
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagatagagataaagtcac 218  Q
    ||||||||||||||||||| |||| ||||  |||||| ||||||||||||||||||||    
T  3622365 ataaattattttgatgagaaataactatttgttagaagagagatagagataaagtcac 3622422  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 17250506 - 17250559
Alignment:
Q  162 taaattattttgatgagagataattattgattagaaaagagatagagataaagt 215  Q
    |||||||||||||||||||| ||| ||||||||||| ||||||||||| |||||    
T  17250506 taaattattttgatgagagaaaatgattgattagaatagagatagagacaaagt 17250559  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 3622153 - 3622191
Alignment:
Q  66 gaaaatacttgagtgactttacattttagtaactttggt 104  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  3622153 gaaaatacttgagtgactttacattttggtgactttggt 3622191  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 15837737 - 15837789
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagatagagataaa 213  Q
    |||||| |||||||||||||  ||| ||| |||| ||||||||||||||||||    
T  15837737 ataaataattttgatgagagggaatgattaattaaaaaagagatagagataaa 15837789  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 52198401 - 52198346
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagatagagataaagtc 216  Q
    |||||||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  52198401 ataaattattttgatgagagataattattggttagaatcgagatagagataaagtc 52198346  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 36498637 - 36498694
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagatagagataaagtcac 218  Q
    |||||||||||||||| |||| |||||||| |||||| ||||||||||| ||||||||    
T  36498637 ataaattattttgatgtgagagaattattggttagaagagagatagagacaaagtcac 36498694  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 6793547 - 6793490
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagatagagataaagtcac 218  Q
    |||||||||||||||||||||||||||||| |||| | ||||||||||| ||| ||||    
T  6793547 ataaattattttgatgagagataattattggttaggatagagatagagacaaaatcac 6793490  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 28067365 - 28067321
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagata 205  Q
    ||||||||||||||||||||| ||| |||| |||||| |||||||    
T  28067365 ataaattattttgatgagagagaatgattggttagaagagagata 28067321  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 32267056 - 32267112
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagatagagataaagtca 217  Q
    |||||||||| |||||  ||| |||||||| |||||||||||||  |||||||||||    
T  32267056 ataaattattctgatggaagagaattattggttagaaaagagattaagataaagtca 32267112  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 41951236 - 41951181
Alignment:
Q  162 taaattattttgatgagagataattattgattagaaaagagatagagataaagtca 217  Q
    |||||||| ||||||||||| ||||||||||||| | ||||||||||| |||||||    
T  41951236 taaattatcttgatgagagagaattattgattaggagagagatagagacaaagtca 41951181  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 28008189 - 28008145
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagata 205  Q
    |||| |||||||||||| ||||||| ||||||||||| |||||||    
T  28008189 ataacttattttgatgaaagataatgattgattagaagagagata 28008145  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 28065492 - 28065448
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagata 205  Q
    |||| |||||||||||| ||||||| ||||||||||| |||||||    
T  28065492 ataacttattttgatgaaagataatgattgattagaagagagata 28065448  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 6983173 - 6983119
Alignment:
Q  164 aattattttgatgagagataattattgattagaaaagagatagagataaagtcac 218  Q
    |||||||||||||||||| ||| ||| ||||| ||||||||||||| ||||||||    
T  6983173 aattattttgatgagagaaaatgattaattaggaaagagatagagacaaagtcac 6983119  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 42691107 - 42691160
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagatagagataaag 214  Q
    ||||||||||||||||||||| ||||||| ||||| | ||||||||||| ||||    
T  42691107 ataaattattttgatgagagagaattattaattaggagagagatagagacaaag 42691160  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 30880474 - 30880530
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagatagagataaagtca 217  Q
    |||||||||||||||| |||||||| ||||||||  | ||||||| |||||||||||    
T  30880474 ataaattattttgatgtgagataatgattgattatgagagagataaagataaagtca 30880530  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 43375759 - 43375702
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagatagagataaagtcac 218  Q
    |||||||||||| |||| |   ||||||||||||||| ||||||||||||||| ||||    
T  43375759 ataaattattttaatgaaatgaaattattgattagaagagagatagagataaaatcac 43375702  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 52404746 - 52404693
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagatagagataaag 214  Q
    ||||||||||||||||| | ||||||||||||||| | ||||||||||| ||||    
T  52404746 ataaattattttgatgaaaaataattattgattaggagagagatagagacaaag 52404693  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 27825056 - 27825104
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagatagaga 209  Q
    ||||||||||||||||||| |||||||||  ||| || |||||||||||    
T  27825056 ataaattattttgatgagaaataattattagttaaaacagagatagaga 27825104  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 21836039 - 21835982
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagatagagataaagtcac 218  Q
    ||||||||||||||||||  | |||||||| |||| ||||||||||||| ||||||||    
T  21836039 ataaattattttgatgaggaaaaattattggttaggaaagagatagagacaaagtcac 21835982  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 14818759 - 14818704
Alignment:
Q  163 aaattattttgatgagagataattattgattagaaaagagatagagataaagtcac 218  Q
    ||||||||||||||||||| |||||||| |||  | ||||||||||| ||||||||    
T  14818759 aaattattttgatgagagagaattattggttatgagagagatagagacaaagtcac 14818704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 8209346 - 8209313
Alignment:
Q  161 ataaattattttgatgagagataattattgatta 194  Q
    ||||||||||||||||||||| ||||||||||||    
T  8209346 ataaattattttgatgagagagaattattgatta 8209313  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 21100015 - 21100071
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagatagagataaagtca 217  Q
    ||||||||||||||||   || ||||||| ||||||||||||||| | |||||||||    
T  21100015 ataaattattttgatgtacgaaaattattaattagaaaagagataaaaataaagtca 21100071  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 4213878 - 4213935
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagatagagataaagtcac 218  Q
    ||||||||||||||  ||||||||||||||||| ||| ||||| ||||| ||||||||    
T  4213878 ataaattattttgagaagagataattattgattggaagagagacagagacaaagtcac 4213935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 17368434 - 17368487
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagatagagataaag 214  Q
    ||||||||||||||||||||| |||||||| |||| ||||||| ||||| ||||    
T  17368434 ataaattattttgatgagagagaattattggttaggaaagagacagagacaaag 17368487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 49315772 - 49315829
Alignment:
Q  161 ataaattattttgatgagagataattattgattagaaaagagatagagataaagtcac 218  Q
    ||||||||||||||||| | ||||||||||||||  | ||||||||||| ||||||||    
T  49315772 ataaattattttgatgaaatataattattgattatgagagagatagagacaaagtcac 49315829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 37719097 - 37719063
Alignment:
Q  161 ataaattattttgatgagagataattattgattag 195  Q
    |||||||||||||||||||||||||||||| ||||    
T  37719097 ataaattattttgatgagagataattattggttag 37719063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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