View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15442_low_23 (Length: 230)
Name: NF15442_low_23
Description: NF15442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15442_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 23041543 - 23041346
Alignment:
| Q |
15 |
caaaggatggaaaaagttatggagcccatatcatgggagaaaaattacttggtgtaattgacatattttaaaatgatgtttccatctttaaagttaacat |
114 |
Q |
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| T |
23041543 |
caaaggatggaaaaagttatggagcccatataatgggagaaaaattacttggtgtaattgacatattttaaaatgacgtttccatctttaaagttaacat |
23041444 |
T |
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| Q |
115 |
gtgaagcgggaagcacatgagcgtcagatataatttcatcgcctgaagcctcgtcattagccaaaatcattccaacagcacctactcgagaagcttct |
212 |
Q |
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| T |
23041443 |
gtgaagcgggaagcacatgagcgtcagatataatttcaccgcctgaagcctcgtcattagccaaaatcattccaacagcacctactcgagaagcttct |
23041346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 42742879 - 42743069
Alignment:
| Q |
21 |
atggaaaaagttatggagcccatatcatgggagaaaaattacttggtgtaattgacatattttaaaatgatgtttccatctttaaagttaacatgtgaag |
120 |
Q |
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| T |
42742879 |
atggaaaaagttatggagcccatatcatgggagaaaaattacttggtgtaattgacatattttaaaatgacgtttccatctttaaagttaacatgtgaag |
42742978 |
T |
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| Q |
121 |
cgggaagcacatgagcgtcagatataatttcatcgcctgaagcctcgtcattagccaaaatcattccaacagcacctactcgagaagcttc |
211 |
Q |
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| T |
42742979 |
cgggaagcacatgagcgtcaggtataatttcaccgcctgaaaaatcgtcattagccaaaatcattccaacagcacctacacgagaagcttc |
42743069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 42752238 - 42752428
Alignment:
| Q |
21 |
atggaaaaagttatggagcccatatcatgggagaaaaattacttggtgtaattgacatattttaaaatgatgtttccatctttaaagttaacatgtgaag |
120 |
Q |
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| T |
42752238 |
atggaaaaagttatggagcccatatcatgggagaaaaattacttggtgtaattgacatattttaaaatgacgtttccatctttaaagttaacatgtgaag |
42752337 |
T |
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| Q |
121 |
cgggaagcacatgagcgtcagatataatttcatcgcctgaagcctcgtcattagccaaaatcattccaacagcacctactcgagaagcttc |
211 |
Q |
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| T |
42752338 |
cgggaagcacatgagcgtcaggtataatttcaccgcctgaaaaatcgtcattagccaaaatcattccaacagcacctacacgagaagcttc |
42752428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 42761706 - 42761896
Alignment:
| Q |
21 |
atggaaaaagttatggagcccatatcatgggagaaaaattacttggtgtaattgacatattttaaaatgatgtttccatctttaaagttaacatgtgaag |
120 |
Q |
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||||||||||||||| | ||| |||||| ||||||||||||||| |||| |||||| ||||| ||||| | | ||||||||||||| |||||||||||| |
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| T |
42761706 |
atggaaaaagttatgaaccccgtatcataggagaaaaattactttgtgttattgacgtatttaaaaattaaatctccatctttaaagctaacatgtgaag |
42761805 |
T |
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| Q |
121 |
cgggaagcacatgagcgtcagatataatttcatcgcctgaagcctcgtcattagccaaaatcattccaacagcacctactcgagaagcttc |
211 |
Q |
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| T |
42761806 |
cgggaagcacatgagcgtcatctataatctcaccgcctgaacccttatcattagccaaaatcattccaatagcacctacacgagaagcttc |
42761896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 212
Target Start/End: Complemental strand, 42735809 - 42735643
Alignment:
| Q |
46 |
catgggagaaaaattacttggtgtaattgacatattttaaaatgatgtttccatctttaaagttaacatgtgaagcgggaagcacatgagcgtcagatat |
145 |
Q |
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| T |
42735809 |
catgggagaaaaattacttggttttattggcgtaattaaaaatgtaacttccatcggtaacattaacatttgaagctggaagcacgtgagcatcagctat |
42735710 |
T |
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| Q |
146 |
aatttcatcgcctgaagcctcgtcattagccaaaatcattccaacagcacctactcgagaagcttct |
212 |
Q |
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|| ||| | ||||| || ||| || |||| |||||||||| |||||||||||||||||||||| |
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| T |
42735709 |
aacttctccccctgactccctctcaataaccaagatcattccaatagcacctactcgagaagcttct |
42735643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 42716436 - 42716477
Alignment:
| Q |
170 |
attagccaaaatcattccaacagcacctactcgagaagcttc |
211 |
Q |
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| T |
42716436 |
attagccaaaataattccaacagcacctacacgagcagcttc |
42716477 |
T |
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