View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15442_low_26 (Length: 213)
Name: NF15442_low_26
Description: NF15442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15442_low_26 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 34055645 - 34055433
Alignment:
| Q |
1 |
tgcatatgctgaacttgccacaaattccatctctttagtaaataggagccacaactctaggatgaatacaggaagcacattgaaaaagatccacctttgg |
100 |
Q |
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| T |
34055645 |
tgcatatgctgaacttgccacaaattccatctcttaagtaaataggagccacaacactaggatgaatacaggaagcacattgaaaaagatccacctttgg |
34055546 |
T |
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| Q |
101 |
agaggagattccagccagttaaagtgccaaagccaactgtgaatatgaatgaatcaaaatgtacttcgtatcttgttgttttctacctgctgtttatctt |
200 |
Q |
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| T |
34055545 |
agaggagattccagccagtgaaagtgccaaagccaactgtgaatatgaatgaatcaaaatgtacttcgtatcttgttgttttctacctgctgtttatctt |
34055446 |
T |
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| Q |
201 |
aagtattttctcg |
213 |
Q |
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||||||||||||| |
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| T |
34055445 |
aagtattttctcg |
34055433 |
T |
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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 47381252 - 47381351
Alignment:
| Q |
42 |
ataggagccacaactctaggatgaatacaggaagcacattgaaaaagatccacctttggagaggagattccagccagttaaagtgccaaagccaactgtg |
141 |
Q |
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| T |
47381252 |
ataggagccacaacactag-atgaatacaggaagcacattgaaaaagatccagctttggagaggagattccagccagttaaagtgccagagccaactgtg |
47381350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 47816721 - 47816816
Alignment:
| Q |
46 |
gagccacaactctaggatgaatacaggaagcacattgaaaaagatccacctttggagaggagattccagccagttaaagtgccaaagccaactgtga |
142 |
Q |
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| T |
47816721 |
gagccacaacactag-atgaatacaggaagcacattgaagaagatccagctttggagaggaaattccagccagttaaagtgctagagccaactgtga |
47816816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 45113354 - 45113434
Alignment:
| Q |
60 |
ggatgaatacaggaagcacattgaaaaagatccacctttggagaggagattccagccagttaaagtgccaaagccaactgt |
140 |
Q |
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| T |
45113354 |
ggatgaatacaggaagcacatcgaaaaagacccagctttggagagacgattccagccagttaaagtaccagaaccaactgt |
45113434 |
T |
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Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 47381702 - 47381766
Alignment:
| Q |
138 |
tgtgaatatgaatgaatcaaaatgtacttcgtatcttgttgttttctacctgctgtttatcttaa |
202 |
Q |
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| T |
47381702 |
tgtgaatatgaatgaatcaaactgtaccctgtatcttgttgttttccacctgctgtttatcttaa |
47381766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 47817195 - 47817259
Alignment:
| Q |
138 |
tgtgaatatgaatgaatcaaaatgtacttcgtatcttgttgttttctacctgctgtttatcttaa |
202 |
Q |
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| T |
47817195 |
tgtgaatatgaatgaattaaactgtaccctgtatcttgttgttttccacctgctgtttatcttaa |
47817259 |
T |
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Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 40243962 - 40244059
Alignment:
| Q |
42 |
ataggagccacaactctaggatgaatacaggaagcacattgaaaaagatccacctttggagaggagattccagccagttaaagtgccaaagccaactgt |
140 |
Q |
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| T |
40243962 |
ataggagccacaactctag-atgaatataggaagcacattgaaaaagatccagctttggagaggcgattccaacctgttaaagtgccagagccaactgt |
40244059 |
T |
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