View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15442_low_27 (Length: 212)
Name: NF15442_low_27
Description: NF15442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15442_low_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 121 - 209
Target Start/End: Complemental strand, 24537060 - 24536974
Alignment:
| Q |
121 |
tactatataattgttctctttagatgaaaaggtggatagaaaagtaattatagtaaagggttacggtcatctattatcttatggagtat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
24537060 |
tactatataattgttctctttagatgaataggtggatagaaaagtaattata--aaggggttacagtcatctattatcttatggagtat |
24536974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 54432545 - 54432605
Alignment:
| Q |
39 |
tataagtctactttatccaatgattctcatcatttgtccataatggaccaatacttataag |
99 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
54432545 |
tataagtctactttatccaatgattctcaccatttgtccagaatggaccaatacttataag |
54432605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 37953848 - 37953798
Alignment:
| Q |
70 |
atttgtccataatggaccaatacttataagggtccagtctaaatggcaccc |
120 |
Q |
| |
|
|||||||||| |||||||||||| | ||| |||||| |||||||||||||| |
|
|
| T |
37953848 |
atttgtccatcatggaccaatacatgtaaaggtccattctaaatggcaccc |
37953798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University