View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15442_low_3 (Length: 562)
Name: NF15442_low_3
Description: NF15442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15442_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 14 - 562
Target Start/End: Original strand, 31819126 - 31819676
Alignment:
| Q |
14 |
aagaagcaatgtgagggaggggttgcgagtgaaagtgggaatttaaatgttaaaaatgataaggggaaagatataaattgcggcatttctagtcatgaaa |
113 |
Q |
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| T |
31819126 |
aagaagcaatgtgagggaggggttacgagtgaaagtgggaatttaaatgttaaaaatgataaggggaaagatataaattgccgcatttctagtcatgaaa |
31819225 |
T |
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| Q |
114 |
aacatgcacgtgctgagagagaaaggagnnnnnnnntgaggagcatgttagatagccttcaagatttgattcctcatcttgcttacaaggtaaattgatt |
213 |
Q |
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| T |
31819226 |
aacatgcacgtgctgagagagaaaggagaaaaaaaatgaggagcatgttagatagccttcaagatttgattcctcatcttgcttacaaggtaaattgatt |
31819325 |
T |
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| Q |
214 |
acattcatttttaagattgatcaattagtttacgttaaccatttttcaatcaaaattttgtgcatattaattaatcctttcataaaatgtgcaccaagtc |
313 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31819326 |
acattcatttttaagattggtcaattagtttacgttaaccatttttcaatcaaaattttgtgcatattaattaatcctttcataaaatgtgcaccaagtc |
31819425 |
T |
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| Q |
314 |
ctcgaagagtgttttggtctaattttatcctttcaa--atannnnnnnnggagagattttctaagtaacaatttttcaatttacatgctcaaaatagttt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31819426 |
ctcgaagagtgttttggtctaattttatcctttcaaatatattttttttggagagattttctaagtaacaatttttcaatttacatgctcaaaatagttt |
31819525 |
T |
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| Q |
412 |
cttaatatacgaagagaacaaatattttttattctttgtaccatggcggaacaactttaacttatttctaattaattttatctgtctactgatgtcatcc |
511 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31819526 |
cttaatatatgaagagaacaaatattttttattctttgtaccatggcgggacaactttaacttatttctaattaattttatctgtctactgatgtcatcc |
31819625 |
T |
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| Q |
512 |
aagaaaaatttgcacgtcactcaacatatatggcaaagatatttaaactta |
562 |
Q |
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| T |
31819626 |
aagaaaaatttgcacgtcactaaacatatatggcaaagatatttaaactta |
31819676 |
T |
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