View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15442_low_9 (Length: 447)
Name: NF15442_low_9
Description: NF15442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15442_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 10 - 430
Target Start/End: Original strand, 28927784 - 28928192
Alignment:
| Q |
10 |
agaagcaaaggagtatccgcatcattcaccagcattgaaacatcaatatatccatgcttgatagaagagagattgctcttactcccacagagtttcggaa |
109 |
Q |
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| T |
28927784 |
agaatcaaaggagtatccgcatcattgaccagcattgaaacatcaatatatgcatgcttgatagaagagagattgctcttactcccacagagtttcggaa |
28927883 |
T |
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| Q |
110 |
gaggtgtaactccaaattcaaaggtacaaaggtttggtgtggatagctccatttcgaaacactccccaagataactactacgcatatttaaattgacaag |
209 |
Q |
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| T |
28927884 |
gaggtgtaactccaaattcaaaggtacaaagatttggtgtggatagctccatttcgaaacactccccaagataactactacgcatatttaaattgacaag |
28927983 |
T |
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| Q |
210 |
catgaaatttgatatgcaaagcgtttttgcatccatgattttataataatcaagggtcaaactattcaacctgtgacatgccaaaaagggctcaacgcga |
309 |
Q |
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| T |
28927984 |
catgaaatttgatatgcaaagcgtttttgcatccatgattctataataatcaagggtcaaactattcaacctgtgacatgccaaaaagggctcaacgcga |
28928083 |
T |
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| Q |
310 |
ccattatcactgccatgaaagacaacaaaccctaaatacaaggtggttaatgctggcaaattgagagaatttgggaacggttttgtactgtaaatattag |
409 |
Q |
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| T |
28928084 |
ccat-----------tgaaagacaacaaaccctaaatacaaggtggttaatgctggcaaattgagagaatttgggaatggttttgtactat-aatattag |
28928171 |
T |
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| Q |
410 |
ccccaactgtaaggtgaagag |
430 |
Q |
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| T |
28928172 |
ccccaactgtaaggtgaagag |
28928192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 14288278 - 14288374
Alignment:
| Q |
62 |
catgcttgatagaagagagattgctcttactcccacagagtttcggaagaggtgtaactccaaattcaaaggtacaaaggtttggtgtggatagctc |
158 |
Q |
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| T |
14288278 |
catgtttgatagaagagagattgattttactcccacggagtttttgaagaggagtacccctaaaataaaagttacagagacttggagtggatagctc |
14288374 |
T |
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