View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15443_high_2 (Length: 490)
Name: NF15443_high_2
Description: NF15443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15443_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 16 - 480
Target Start/End: Original strand, 48106088 - 48106552
Alignment:
| Q |
16 |
tcataaacaatgttgtttctggatcaagctcatgagcttttaaatagtataattcagatgcatttttacctagtttgtcctcataaaagtgaaaatggac |
115 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
48106088 |
tcataaacaattttgtttctggatcaagctcatgagcttttaaatagtataattcagatgcattttcacctagtttgtcctcataaaagtgaaaatggac |
48106187 |
T |
|
| Q |
116 |
attttcattcaccacatcccatgcaatcaattctcctttataccttttaacaacagattcgattcnnnnnnncgcggctttgcgcaattcatcgggcgat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48106188 |
attttcattcaccacatcccatgcaatcaattctcctttataccttttaacaacagattcgattctttttttcgcggctttgcgcaattcatcgggcgat |
48106287 |
T |
|
| Q |
216 |
aaatacttaacccattcaggttgatatttttcatcgtcccagaaaatgttatgacctctgacagaaattccattatctttagcaaattctaacattgtat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48106288 |
aaatacttaacccattcaggttgatatttttcatcgtcccagaaaatgttatgacctctgacagaaattccattatctttagcaaattctaacattgcat |
48106387 |
T |
|
| Q |
316 |
ctgagatagtgtagttttcttggcctggaattatttctgtactataccatttcatttcattggtgaaagttgtgtatttgaatcttgacacaaaccattc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48106388 |
ctgagatagtgtagttttcttggcctggaattatttctgtactataccatttcatttcattggtgaaagttgtgtatttgaatcttgacacaaaccattc |
48106487 |
T |
|
| Q |
416 |
ctggtagtcaatgtttgtgagtatatgatggttcatcccacatccaaatgggaaatctgcctttg |
480 |
Q |
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| T |
48106488 |
ctggtagtcaatgtttgtgagtatatgatggttcatcccacatccaaatgggaaatctgcctttg |
48106552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 58 - 476
Target Start/End: Original strand, 48062495 - 48062913
Alignment:
| Q |
58 |
aatagtataattcagatgcatttttacctagtttgtcctcataaaagtgaaaatggacattttcattcaccacatcccatgcaatcaattctcctttata |
157 |
Q |
| |
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||||||||| | |||| |||||||| || || ||||||||| ||||||| || |||||||| ||||| ||||| |||||||||||||||| ||||||||| |
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| T |
48062495 |
aatagtatactgcagaggcatttttgccgaggttgtcctcaaaaaagtggaagtggacattctcatttaccacgtcccatgcaatcaattgtcctttata |
48062594 |
T |
|
| Q |
158 |
ccttttaacaacagattcgattcnnnnnnncgcggctttgcgcaattcatcgggcgataaatacttaacccattcaggttgatatttttcatcgtcccag |
257 |
Q |
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|||| || || |||| |||| || |||| || |||||||| || || | || | |||||||||||||| | ||||| |||||| |
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| T |
48062595 |
ccttgagaccacggatttcattctttttgcagctgcttctcgtaattcatcaggagacagggacaaatcccattcaggttgacgtctttcactgtcccac |
48062694 |
T |
|
| Q |
258 |
aaaatgttatgacctctgacagaaattccattatctttagcaaattctaacattgtatctgagatagtgtagttttcttggcctggaattatttctgtac |
357 |
Q |
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||||||||||||||||||||||| || ||||| || |||||||||| | ||| | ||||| |||||| |||||||| |||||| | ||| | ||||||| |
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| T |
48062695 |
aaaatgttatgacctctgacagatatgccattttccttagcaaatttcagcatggcatctgggatagtatagttttcatggccttggattttctctgtac |
48062794 |
T |
|
| Q |
358 |
tataccatttcatttcattggtgaaagttgtgtatttgaatcttgacacaaaccattcctggtagtcaatgtttgtgagtatatgatggttcatcccaca |
457 |
Q |
| |
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||||||| ||||| || || ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |||||||| |||| |
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| T |
48062795 |
tataccacttcatctcgttagtgaaagttgtgtatttgaatcttgacacaaaccatttctggtagtcactgtttgtgaggatatgacggttcatcgcaca |
48062894 |
T |
|
| Q |
458 |
tccaaatgggaaatctgcc |
476 |
Q |
| |
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|||| |||| |||| |||| |
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| T |
48062895 |
tccatatggaaaatttgcc |
48062913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 244 - 480
Target Start/End: Original strand, 48066770 - 48067006
Alignment:
| Q |
244 |
tttcatcgtcccagaaaatgttatgacctctgacagaaattccattatctttagcaaattctaacattgtatctgagatagtgtagttttcttggcctgg |
343 |
Q |
| |
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||||||||||||| |||||| |||||||||||||||||| ||||| ||||| ||||||| | ||| | ||| | ||||| |||||||| |||||| | |
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| T |
48066770 |
tttcatcgtcccacaaaatggcatgacctctgacagaaatgccattttctttggcaaatttcagcatggcatcaggaatagtatagttttcctggccttg |
48066869 |
T |
|
| Q |
344 |
aattatttctgtactataccatttcatttcattggtgaaagttgtgtatttgaatcttgacacaaaccattcctggtagtcaatgtttgtgagtatatga |
443 |
Q |
| |
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|||| | |||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| || ||| |
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| T |
48066870 |
aattttctctgtactataccacttcatctcattagtgaaagttgtgtacttgaatcttgacacaaaccatttctggtactcaatgtttgtgaggatgtga |
48066969 |
T |
|
| Q |
444 |
tggttcatcccacatccaaatgggaaatctgcctttg |
480 |
Q |
| |
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| ||||||||||||||| ||||||||||||||||||| |
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| T |
48066970 |
tagttcatcccacatccgaatgggaaatctgcctttg |
48067006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 87 - 480
Target Start/End: Original strand, 48099558 - 48099951
Alignment:
| Q |
87 |
agtttgtcctcataaaagtgaaaatggacattttcattcaccacatcccatgcaatcaattctcctttataccttttaacaacagattcgattcnnnnnn |
186 |
Q |
| |
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||||||| |||| ||||||| | |||||||| |||||||| || ||||||||||||| || |||| |||||||| ||| |||||| |||| |
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| T |
48099558 |
agtttgttctcaaaaaagtggtagtggacattctcattcacaacgtcccatgcaatcagttgtcctctataccttgaaaccacagatcttattctttttg |
48099657 |
T |
|
| Q |
187 |
ncgcggctttgcgcaattcatcgggcgataaatacttaacccattcaggttgatatttttcatcgtcccagaaaatgttatgacctctgacagaaattcc |
286 |
Q |
| |
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|| ||||| || ||||| || || |||| |||||||||||| ||| ||| | |||||||||||||||||| | ||||||||||||||||||| || |
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| T |
48099658 |
cagccgcttttcgtaattcttcaggagataggaacttaacccatttaggctgaaaagtttcatcgtcccagaaaacggtatgacctctgacagaaatgcc |
48099757 |
T |
|
| Q |
287 |
attatctttagcaaattctaacattgtatctgagatagtgtagttttcttggcctggaattatttctgtactataccatttcatttcattggtgaaagtt |
386 |
Q |
| |
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||| ||||| || |||| | ||| | ||||| |||||| |||||||| |||||| ||| | | |||||||||||||| ||||| ||||| || |||| | |
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| T |
48099758 |
attttctttggcgaatttcatcatggcatctgggatagtatagttttcctggccttgaaatctctctgtactataccacttcatctcattagtaaaagct |
48099857 |
T |
|
| Q |
387 |
gtgtatttgaatcttgacacaaaccattcctggtagtcaatgtttgtgagtatatgatggttcatcccacatccaaatgggaaatctgcctttg |
480 |
Q |
| |
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||||| ||||||||||||||||||||| |||||| |||| |||||| || || | |||||||||||||||||||| |||||||| |||||||| |
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| T |
48099858 |
gtgtacttgaatcttgacacaaaccatctctggtactcaaagtttgtaaggatgtaatggttcatcccacatccaagtgggaaatttgcctttg |
48099951 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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