View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15443_high_6 (Length: 247)
Name: NF15443_high_6
Description: NF15443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15443_high_6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 23598076 - 23597832
Alignment:
| Q |
7 |
aaatgaagaacaggaacataaaccattgttaacattaaa----gggaaaagtacattgaaataagatagagctcgctgtactacttaaaccaaaacacat |
102 |
Q |
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| T |
23598076 |
aaatgaagaacaggaacttaaaccattgttaacattaaataaagggaaaagtacattgaaataagacagagctcgctgtactagctaaaccaaaacacat |
23597977 |
T |
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| Q |
103 |
acatattactaggatgctatttcaaaagagtccttgcaaaatcctgaaccacacataaattccattacaaaagttccgcttaatcaacttcctcaatttt |
202 |
Q |
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| T |
23597976 |
acatattactaggatgctatttcaaaagagtccttgcaaaatcctgaaccacacataaatcccattacaaaagttccgcttaatcaacttcctcaatttt |
23597877 |
T |
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| Q |
203 |
ggggccagcaccacttccactgccagcagcaggtccatcctcatc |
247 |
Q |
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| T |
23597876 |
ggggccagcaccacttccactgccagcagcaggtccatcctcatc |
23597832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 23589087 - 23588980
Alignment:
| Q |
140 |
aaaatcctgaaccacacataaattccattacaaaagttccgcttaatcaacttcctcaattttggggccagcaccacttccactgccagcagcaggtcca |
239 |
Q |
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|||||| |||||||| ||| ||| |||| | |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| ||| |
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| T |
23589087 |
aaaatcatgaaccacccatcaatcccatgaacaaagtttagcttaatcaacttcctcaattttggggccagcaccgcttccactgccagctgtaggacca |
23588988 |
T |
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| Q |
240 |
tcctcatc |
247 |
Q |
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| T |
23588987 |
tcctcatc |
23588980 |
T |
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