View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15443_low_1 (Length: 883)
Name: NF15443_low_1
Description: NF15443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15443_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 18 - 612
Target Start/End: Complemental strand, 2631878 - 2631274
Alignment:
| Q |
18 |
tattgcaaattatgcgcaatacaaaccaatttaggccagcattcnnnnnnnctttt---aaaggaatgacagcattcattaagtttgtaaaataaaacca |
114 |
Q |
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| T |
2631878 |
tattgcaaattatatgcaatacaaaccaatttaggccagcattctttttttttttttttaaaggaaggacagcattctttaagtttgtaaaataaaacca |
2631779 |
T |
|
| Q |
115 |
ttttacgattattctttctagttttcgttttgtttttatattaaaatacagaagattgctttcgtttgtagttgtgctctcactctccgatcaattgttc |
214 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
2631778 |
ttttaagattattctttctagttttcgttttgtttttatattaaaatacagaagattgctttcgtctgtagttgtactctcactctccgatcaattgttc |
2631679 |
T |
|
| Q |
215 |
ttttttgtgtaaaagtatttaattttagacaaattcaacactagctggtatacaatgaaatgaacaatcaatttccatggcacttttatttacttttatg |
314 |
Q |
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| T |
2631678 |
ttttttgtgtaaaagtatttaattttagacaaattcaacactagctggtatacgatgaaatgaacaatcaatttccatggcacttttatttacttttatg |
2631579 |
T |
|
| Q |
315 |
taatttacttttggcattgttaaatattaattggtgtgaagagaaaaatgcatactagtgcaaaacataattattagcacaggcttttaaaccggtttct |
414 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2631578 |
taatttacttttggcattgtcgaatattaattggtgtgaagagaaaaatgtatactagtgcaaaacataattattagcacaggcttttaaaccggtttct |
2631479 |
T |
|
| Q |
415 |
acaagct-------aaaatgaggtggtatggtgaaagttttgaaattagtggaaacattttttgagttggttatttgactaacctacttagaaggtgttt |
507 |
Q |
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| T |
2631478 |
acaagcttctttaaacaatgaggtggtatggtgaaagttttgaaattagtggaaacattttttgagttggttatttgactaacctacttagaaggtgttt |
2631379 |
T |
|
| Q |
508 |
ttaattctgatccctttcatgtatatccgtgaaacctgaaatccttggacttgaatctcattttttcaacaatcacttgtgtccttcaccgtcatcacat |
607 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2631378 |
ttaactctgatccctttcatgtatatctgtgaaacctgaaatccttggacttgaatctcattttttcaacaatcacttgtgtccttcaccgtcatcacat |
2631279 |
T |
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| Q |
608 |
gtaga |
612 |
Q |
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||||| |
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| T |
2631278 |
gtaga |
2631274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 674 - 872
Target Start/End: Complemental strand, 2631209 - 2631017
Alignment:
| Q |
674 |
caataagatacaatacacttgtcatttccgtgtttttcattttgttttatttccgcaaatttggtgtttagatttgcaattgcaaaactcaagggtaaaa |
773 |
Q |
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| T |
2631209 |
caataagatacaatacacttgtcatttccgtgtttttcattttgttttatttccgcaaatttggtgtttagatttgcaattgcaaaact------taaaa |
2631116 |
T |
|
| Q |
774 |
ttttgggtttcatttcccttcttgcatctatgttgtttctttgttctaccctagcaaaaggtaaggtttttgttttgttgtatcttattattcatatca |
872 |
Q |
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| T |
2631115 |
ttttgggtttcatttcccttcttgcatctatgttgtttctttgttctaccctagcaaaaggtaaggtttttgttttgttgtatcttattattcatatca |
2631017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 811 - 872
Target Start/End: Complemental strand, 15345024 - 15344963
Alignment:
| Q |
811 |
tctttgttctaccctagcaaaaggtaaggtttttgttttgttgtatcttattattcatatca |
872 |
Q |
| |
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||||||||| ||||||| |||||||| |||| ||||||||||| || ||||||||||||||| |
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| T |
15345024 |
tctttgttcaaccctagtaaaaggtacggttattgttttgttggattttattattcatatca |
15344963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 348
Target Start/End: Complemental strand, 18626436 - 18626387
Alignment:
| Q |
297 |
cttttatttacttttatgtaatttacttttggcattgttaaatattaattgg |
348 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||| |||||| |
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| T |
18626436 |
cttttatttacttt-atgtaattta-ttttggcattgttaaatatcaattgg |
18626387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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