View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15443_low_2 (Length: 579)
Name: NF15443_low_2
Description: NF15443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15443_low_2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 579
Target Start/End: Original strand, 1715294 - 1715869
Alignment:
| Q |
18 |
gcacacaaccatccaatggagctaaagttggaaggtcgtattcttgttggtcatttaaatgatgaa-------accttgttagttactttgcacatgatg |
110 |
Q |
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| T |
1715294 |
gcacacaaccatccaatggagctaaagttggaaggtcgtattcttgttggtcatttaaatgatgaagagaaaaaccttgttagttactttgcacatgatg |
1715393 |
T |
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| Q |
111 |
gatgtcaagattgataattctgtgtgcacaatgatttcctttgcaataaatgtgtgtnnnnnnnnn-gacatgttactaattggtttcaaacaatttctc |
209 |
Q |
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| T |
1715394 |
gatgtcaagattgataattctgtgtgcacgatgatttcctttgcaataaatgtgtgtcaaaaaaaaagacatgttactaattggtttcaaacaatttctc |
1715493 |
T |
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| Q |
210 |
catctattcttaagttgccaaggaagtatgtcataacacttgaaggtcgattacgaacttgaaatctttttggagttgctatagttatcaaactatgtta |
309 |
Q |
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| T |
1715494 |
catctattcttaagttgccaaggaagtatgtgataacacttgaaggtcgattacgaacttgaaatctttttgaatttgctatagttatcaaactatgtta |
1715593 |
T |
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| Q |
310 |
atcatgtcgatggttgtttgattgagattgaaagatttagaatttaattaaaataggtacttcgtgttgttaaattaaaattgaaatctagatgattcga |
409 |
Q |
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| T |
1715594 |
atcatgtcgatggttgtttgattgagatt-ttagatttagaatttaattaaaataggtacttcgtgtttttaaattaaaattgaaacctagatgattcga |
1715692 |
T |
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| Q |
410 |
tttcaatgtaatgatcattgataaactacatgcgtgaaatgtgaattcatttgtcgagtgaattcacatacgtaattgacatccgtacta-----gtaa- |
503 |
Q |
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| T |
1715693 |
tctcaatgtaatgatcattgataaactacatgcgtgaaatgtgaattcatttgtcgagtgaattcacatacgtaattatgttcttgtctaatcacgtaaa |
1715792 |
T |
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| Q |
504 |
-tcgaccagagcttggccacatacattcgtgctagtaataatgtttaaaaattaaggaaaagtgatggataaaaatt |
579 |
Q |
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| T |
1715793 |
gaaaactagagcttggccacatatattcgtactagtaataatatttaaaaattaaggaaaattgatggagaaaaatt |
1715869 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 30019337 - 30019398
Alignment:
| Q |
194 |
tttcaaacaatttctccatctattcttaagttgccaaggaagtatgtcataacacttgaagg |
255 |
Q |
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| T |
30019337 |
tttcaaacaatttctctatttattcttaagttgacaaggaactatgtgatgagacttgaagg |
30019398 |
T |
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