View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15443_low_4 (Length: 445)
Name: NF15443_low_4
Description: NF15443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15443_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 18417939 - 18418371
Alignment:
| Q |
1 |
gttctctcctcaagccagcaatactccctggtgaatcagtgatcaaatttgaagagtaactcaatgatgcctcagtagaaccttctttaaagctctttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18417939 |
gttctctcctcaagccagcaatactccctggtgaatcagtgatcaaatttgaagagtaactcaatgatgcctcagtagaaccttctttaaagctctttga |
18418038 |
T |
|
| Q |
101 |
cttttttatagttgaaatctttgttgagtttcttggtattacaatcttttcagaacttgtgttcaagagataagtttcattgactctctttgttgctggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18418039 |
cttttttatagttgaaatctttgttgagtttcttggtattacaatcttttcagaacttgtgttcaagagataagtttcattgactctctttgttgctggt |
18418138 |
T |
|
| Q |
201 |
ggtcttggtgactttagctttggagaaagtggtggtgttgatgaagttttggttggaagtggtggtgatgatggtagagaaagtgattttggtggcaatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
18418139 |
ggtcttggtgactttagctttggagaaagtggtggtgttgatgaagttttggttggaagtggtggtgatgatggtagtgaaagtgattttggtggtaatt |
18418238 |
T |
|
| Q |
301 |
tcttgattgaatttcttctttcaagatttggaactctgttacaagttggttgaagaacaggtcttccattgattttggcaacaggtgatgtagctgtggc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18418239 |
tcttgattgaatttcttctttcaagatttggcactctgttacaagttggttgaagaacaggtcttccattgattttggcaacaggtgatgtagctgtggc |
18418338 |
T |
|
| Q |
401 |
tgtggttgtgctttctatgcctactttggcctt |
433 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
18418339 |
tgtggttttgctttctatgcctactttggcctt |
18418371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 383
Target Start/End: Original strand, 26804663 - 26804769
Alignment:
| Q |
277 |
gagaaagtgattttggtggcaatttcttgattgaatttcttctttcaagatttggaactctgttacaagttggttgaagaacaggtcttccattgatttt |
376 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||| || ||||||||||| || || |||||||||||| | |
|
|
| T |
26804663 |
gagaaagtgattttggtgttgatttcttaattgagtttcttctttcaagatttggaacatggttgcatgttggttgaagtactggccttccattgattct |
26804762 |
T |
|
| Q |
377 |
ggcaaca |
383 |
Q |
| |
|
|||||| |
|
|
| T |
26804763 |
agcaaca |
26804769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 277 - 383
Target Start/End: Original strand, 32591176 - 32591282
Alignment:
| Q |
277 |
gagaaagtgattttggtggcaatttcttgattgaatttcttctttcaagatttggaactctgttacaagttggttgaagaacaggtcttccattgatttt |
376 |
Q |
| |
|
||||||||||||| |||| ||||||| ||||| ||||||||||||||||||| ||| ||| || ||||||||||| || || |||||||||||| | |
|
|
| T |
32591176 |
gagaaagtgatttcggtgttgatttcttaattgagtttcttctttcaagatttgaaacatggttgcatgttggttgaagtactggccttccattgattct |
32591275 |
T |
|
| Q |
377 |
ggcaaca |
383 |
Q |
| |
|
|||||| |
|
|
| T |
32591276 |
agcaaca |
32591282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University