View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15443_low_6 (Length: 391)
Name: NF15443_low_6
Description: NF15443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15443_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 375
Target Start/End: Complemental strand, 326006 - 325642
Alignment:
| Q |
11 |
tcaaaactaaaattgaaatagcattgaatcactaataagcttagtataatgtgatgtaatgcaggttgattgatgaagaaaatccagaatatgaaaatga |
110 |
Q |
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| T |
326006 |
tcaaaactaaaattgaaatagcattgaatcactaataagcttagtataatgtgatgtaatgcaggttgattgatgaagaaaatccagaatatgaaaatga |
325907 |
T |
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| Q |
111 |
aaaagaatggaannnnnnnngtggttgatacatacaaattagatttagaagaagagaaagagaaactaaaaccaaatggcgaaagaaatgggcaacaatg |
210 |
Q |
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| T |
325906 |
aaaagaatggaaatttttttgtggttgatacatacaaattagatttagaagaagagaaagagaaactaaaaccaaatggcgaaagaaatgggcaacaatg |
325807 |
T |
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| Q |
211 |
ttgtctttctattattatgatgatatgataactaactttatggttttaacaatgttatcttttttcattaaagatatcaaaattttaaaatatgtcgcaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
325806 |
ttgtctttctattattatgatgatatgataactaactttatggtttcaacaatgttatcttttttcattaaagatatcaaaattttaaaatatgtcgcaa |
325707 |
T |
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| Q |
311 |
atagtcctacacttttgacatttatataatttgtaaaggtatcttttctacccttatgtaaaaat |
375 |
Q |
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| T |
325706 |
atagtcctacacttttgacatttatataatttgtaaaggtatcttttctacccttatgtaaaaat |
325642 |
T |
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