View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15444_high_1 (Length: 622)
Name: NF15444_high_1
Description: NF15444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15444_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 1 - 607
Target Start/End: Original strand, 48449870 - 48450476
Alignment:
| Q |
1 |
gagaaggatgtaaatattgaggaaaacatggtggaaactagtaatgaagagagagtaaatagagctaattggatagagaggcttgtggaaattaagaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48449870 |
gagaaggatgtaaatattgaggaaaacatggtggaaactagtaatgaagagagagtaaatagagctaattggatagagaggcttgtggaaattaagaaac |
48449969 |
T |
|
| Q |
101 |
attggagaaacaggttaccgaaagaaagcgttgatatggacgtgatgtgcgacgattatacatctggtgaatgtgattgtgacgatgacagtgtttgtat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48449970 |
attggagaaacaggttaccgaaagaaagcgttgatatggacgtgatgtgcgacgattatacatctggtgaatgtgattgtgacgatgacagtgtttgtat |
48450069 |
T |
|
| Q |
201 |
ggcggattatgacgatgaagaagaaggtgggcaagaagtgacacatgatcgcgattcgttctcaaaatttcttgtacaagtgtcattgtctgataccaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48450070 |
agcggattatgacgatgaagaagaaggtgggcaagaagtgacacatgatcgcgattcgttctcaaaatttcttgtacaagtgtcattgtctgataccaaa |
48450169 |
T |
|
| Q |
301 |
ctttactctcagctagctttcctgtgcaacatggcttacgtaataccccaaatcaaggtaagcacaaatttgcatatttaatcaatgagatttcatatat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48450170 |
ctttactctcagctagctttcctgtgcaacatggcttacgtaataccccaaatcaaggtaagcacaaatttgcatatttaatcaatgagatttcatatat |
48450269 |
T |
|
| Q |
401 |
atttccagatttccttttccatgcataaatcaaaagataaacatgaacatacaactctttctttctgaccaatttgcaggctcaggagttgaggagatac |
500 |
Q |
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| T |
48450270 |
atttccagatttccttttgcatgcataaatcaaaagataaacatgaacatacaactctttctttctgaccaatttgcaggctcaggagttgaggagatac |
48450369 |
T |
|
| Q |
501 |
tatagccttcagtttataacatcttctttagagaagaaagctgcagtggcaaagttaaaagcaaaacttactcaggactcaccaaattcacctatagatg |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48450370 |
tatagccttcagtttataacatcttctttagagaagaaagctgcagtggcaaagttaaaagcaaaacttactcaggactcaccaaattcacctatagatg |
48450469 |
T |
|
| Q |
601 |
acctagt |
607 |
Q |
| |
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||||||| |
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| T |
48450470 |
acctagt |
48450476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 364
Target Start/End: Complemental strand, 28218327 - 28218277
Alignment:
| Q |
314 |
tagctttcctgtgcaacatggcttacgtaataccccaaatcaaggtaagca |
364 |
Q |
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|||||||||| |||||||||||||| ||||||| |||||||||| |||||| |
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| T |
28218327 |
tagctttcctttgcaacatggcttatgtaatacaccaaatcaagataagca |
28218277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 364
Target Start/End: Complemental strand, 28229209 - 28229159
Alignment:
| Q |
314 |
tagctttcctgtgcaacatggcttacgtaataccccaaatcaaggtaagca |
364 |
Q |
| |
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|||||||||| |||||||||||||| ||||||| |||||||||| |||||| |
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|
| T |
28229209 |
tagctttcctttgcaacatggcttatgtaatacaccaaatcaagataagca |
28229159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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