View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15444_high_11 (Length: 201)
Name: NF15444_high_11
Description: NF15444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15444_high_11 |
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| [»] scaffold0684 (1 HSPs) |
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| [»] scaffold0163 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 64; Significance: 3e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 41034699 - 41034762
Alignment:
| Q |
63 |
tccagttagcaactgtgtgaacaaaagacaagaaaataactgcaagtcctatttgaaagcttta |
126 |
Q |
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| T |
41034699 |
tccagttagcaactgtgtgaacaaaagacaagaaaataactgcaagtcctatttgaaagcttta |
41034762 |
T |
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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 41034786 - 41034822
Alignment:
| Q |
144 |
atcaaagtactaaaatataaaagacaggagaggtctg |
180 |
Q |
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| T |
41034786 |
atcaaagcactaaaatataaaagacaggagaggtctg |
41034822 |
T |
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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 19393908 - 19393944
Alignment:
| Q |
144 |
atcaaagtactaaaatataaaagacaggagaggtctg |
180 |
Q |
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||||||| ||||||||||||||||||||||| ||||| |
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| T |
19393908 |
atcaaagcactaaaatataaaagacaggagatgtctg |
19393944 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 3801344 - 3801308
Alignment:
| Q |
144 |
atcaaagtactaaaatataaaagacaggagaggtctg |
180 |
Q |
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||||||||| ||||||||||||||||||||||||||| |
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|
| T |
3801344 |
atcaaagtaataaaatataaaagacaggagaggtctg |
3801308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 8831017 - 8831053
Alignment:
| Q |
144 |
atcaaagtactaaaatataaaagacaggagaggtctg |
180 |
Q |
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|
||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
8831017 |
atcaaagcactaaaatataaaagacaggagatgtctg |
8831053 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 176
Target Start/End: Original strand, 14295245 - 14295277
Alignment:
| Q |
144 |
atcaaagtactaaaatataaaagacaggagagg |
176 |
Q |
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|
||||||| ||||||||||||||||||||||||| |
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|
| T |
14295245 |
atcaaagcactaaaatataaaagacaggagagg |
14295277 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0684 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0684
Description:
Target: scaffold0684; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 5996 - 5957
Alignment:
| Q |
63 |
tccagttagcaactgtgtgaacaaaagacaagaaaataac |
102 |
Q |
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|||||||||||||||| |||||||||||||||| |||||| |
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| T |
5996 |
tccagttagcaactgtttgaacaaaagacaagagaataac |
5957 |
T |
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Target: scaffold0163 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 102
Target Start/End: Original strand, 2128 - 2167
Alignment:
| Q |
63 |
tccagttagcaactgtgtgaacaaaagacaagaaaataac |
102 |
Q |
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|||||||||||||||| |||||||||||||||| |||||| |
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| T |
2128 |
tccagttagcaactgtttgaacaaaagacaagagaataac |
2167 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 176
Target Start/End: Original strand, 19407635 - 19407667
Alignment:
| Q |
144 |
atcaaagtactaaaatataaaagacaggagagg |
176 |
Q |
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|
||||||||| ||||||||||||||||||||||| |
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|
| T |
19407635 |
atcaaagtaataaaatataaaagacaggagagg |
19407667 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 10990368 - 10990332
Alignment:
| Q |
144 |
atcaaagtactaaaatataaaagacaggagaggtctg |
180 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||| |
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| T |
10990368 |
atcaaagtactaaaatattaaagacgggagaggtctg |
10990332 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 176
Target Start/End: Original strand, 18811481 - 18811513
Alignment:
| Q |
144 |
atcaaagtactaaaatataaaagacaggagagg |
176 |
Q |
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|
||||||| ||||||||||||||||||||||||| |
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|
| T |
18811481 |
atcaaagcactaaaatataaaagacaggagagg |
18811513 |
T |
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