View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15444_high_4 (Length: 392)
Name: NF15444_high_4
Description: NF15444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15444_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 112 - 371
Target Start/End: Original strand, 20376999 - 20377258
Alignment:
| Q |
112 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccataaggctgaatggcaagccccgg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
20376999 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcatcacttccataaggctgaatggcaagccctgg |
20377098 |
T |
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| Q |
212 |
tgttggtgttgccggagacaatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcatattccgaacctacagatttg |
311 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
20377099 |
tgtcggtgttgccggagacaatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcagattctgaacctacagatttg |
20377198 |
T |
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| Q |
312 |
gactttgctccagtgtccgaaccagcatcatttcccacaacttctgtcacgatggcagca |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
20377199 |
gactttgctccagtgtccgaaccagcatcatttcccacaacttccatcacgttggcagca |
20377258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 112 - 375
Target Start/End: Original strand, 20389371 - 20389634
Alignment:
| Q |
112 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccataaggctgaatggcaagccccgg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || |
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| T |
20389371 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccacaaggctgaatagcaagccctgg |
20389470 |
T |
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| Q |
212 |
tgttggtgttgccggagacaatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcatattccgaacctacagatttg |
311 |
Q |
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| T |
20389471 |
agtcggtgtcaccggagacaatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcagattccgaacctacagatttg |
20389570 |
T |
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| Q |
312 |
gactttgctccagtgtccgaaccagcatcatttcccacaacttctgtcacgatggcagcattgt |
375 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
20389571 |
gactttgctccagtgtccgaaccagcatcatttcccaacacttccgtcacgatggcagcattgt |
20389634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 112 - 338
Target Start/End: Original strand, 20369070 - 20369296
Alignment:
| Q |
112 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccataaggctgaatggcaagccccgg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || |
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| T |
20369070 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccacaaggctgaatagcaagccctgg |
20369169 |
T |
|
| Q |
212 |
tgttggtgttgccggagacaatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcatattccgaacctacagatttg |
311 |
Q |
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|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20369170 |
agtcggtgtcaccggagacaatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcagattccgaacctacagatttg |
20369269 |
T |
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| Q |
312 |
gactttgctccagtgtccgaaccagca |
338 |
Q |
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||||||||||||||||||| ||||||| |
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| T |
20369270 |
gactttgctccagtgtccggaccagca |
20369296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 20347674 - 20347759
Alignment:
| Q |
112 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccataaggctga |
197 |
Q |
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|||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20347674 |
tcataccaatgggagccaaactctgcagttttccagaaccacgaggacgtccccttccacgcttctcctcacttccactaggctga |
20347759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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