View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15444_high_6 (Length: 272)
Name: NF15444_high_6
Description: NF15444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15444_high_6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 4078689 - 4078423
Alignment:
| Q |
7 |
tcatcaatatataccttgaaatttgcaaa-tcatcacaatcattccctgctattgattgatcatatccctagccatttaaactttatgcatcaacatcag |
105 |
Q |
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|||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4078689 |
tcataaatatataacttgaaatttgcaaaatcatcacaatcattccctgctattgatagatcacatccctagccatttaaactttatgcatcaacatcag |
4078590 |
T |
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| Q |
106 |
gagtgattttgctttataatctgtaactgctaactttgcaacattcactagatgaacaggttcctcgcctagcgaacaaccacaaaatgttcattgccaa |
205 |
Q |
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| T |
4078589 |
gagtgattttgctttataatctgtaactgctaactttgcaacattcactagatgaacaggttcctcgcctagcgaacaaccacaaaatgttcattgccaa |
4078490 |
T |
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| Q |
206 |
agcaaaattagcaaaagatagagtttttaaaaaattagcagattcgctaggcgaataggtcattgcc |
272 |
Q |
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| T |
4078489 |
agcaaaattagcaaaagatagagtttttaaaaaattagcagattcgctaggcgaataggtcattgcc |
4078423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 32 - 272
Target Start/End: Complemental strand, 4101416 - 4101176
Alignment:
| Q |
32 |
caaatcatcacaatcattccctgctattgattgatcatatccctagccatttaaactttatgcatcaacatcaggagtgattttgctttataatctgtaa |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4101416 |
caaatcatcacaatcattccctgctattgattgatcatatccctagccatttaaactttatgcatcaacatcaggagtgattttgctttataatctgtaa |
4101317 |
T |
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| Q |
132 |
ctgctaactttgcaacattcactagatgaacaggttcctcgcctagcgaacaaccacaaaatgttcattgccaaagcaaaattagcaaaagatagagttt |
231 |
Q |
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| T |
4101316 |
ctgctaactttgcaacattcactagatgaacagattcctcgcctagcgaacaaccacaaaatgttcattgccaaagcaaaattaacaaaagatagagttt |
4101217 |
T |
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| Q |
232 |
ttaaaaaattagcagattcgctaggcgaataggtcattgcc |
272 |
Q |
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| T |
4101216 |
ttaaaaaattagcagattcgctaggcgaataggtcattgcc |
4101176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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