View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15444_low_1 (Length: 845)
Name: NF15444_low_1
Description: NF15444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15444_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 749; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 749; E-Value: 0
Query Start/End: Original strand, 20 - 836
Target Start/End: Complemental strand, 45882513 - 45881702
Alignment:
| Q |
20 |
ctacaaacatcaggctggaagaaattgcactgttttagactagatactgcgcagcacataccatcaaggtcaatatttccgagaatatctctgtataaat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
45882513 |
ctacaaacatcaggctggaagaaattgcactgttttagactagatactgcgcagcacttaccatcaaggtcaatatttccgagaatatctctgtatattt |
45882414 |
T |
|
| Q |
120 |
gttaaactagattttgatccacgcgttacgcggatgtcttgcatttcattttaaggaaaataatatgaacatattcttttattaaaagttgtatggtaaa |
219 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45882413 |
c-----ctagattttgacccacgcgttacgcggatgtcttgcatttcattttaaggaaaataatatgaacatattcttttattaaaagttgtatggtaaa |
45882319 |
T |
|
| Q |
220 |
tacaaaatttgtttctctcgtttgaactccctttcaatttattcccaatctactttctatgtttactcgattgtatctacatttcaactatttgaataag |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45882318 |
tacaaaatttgtttctctcgtttgaactccctttcaatttattcccaatctactttctatgtttactcgattgtatctacatttcaattatttgaataag |
45882219 |
T |
|
| Q |
320 |
attttttcaatttcagaagctcgatatagaattgcataattacttgtattgaagaaaattattccgtgttgttttaagcttttatgattattaggtatta |
419 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45882218 |
attttttcaatttcagaagctcggtatagaattgcataattacttgtattgaagaaaatcattccgtgttgttttaagcttttatgattattaggtatta |
45882119 |
T |
|
| Q |
420 |
taacctgaatgtctaattgatctgatgagggcatcatcccaccaccgatgaagagattaatgctcagcgcgagtgaaaacgtagatagactcaagtgact |
519 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45882118 |
taacctgaatgtctaattgatctgatgaggccatcatcccaccaccgatgaagagattaatgctcagcgcgagtgaaaacgtagatagactcaagtgact |
45882019 |
T |
|
| Q |
520 |
tacatgactatattatccttcacatactgtcattttttaaggtcaaagatgctgttgttggaacttgcattttgtccccaagatgcaaggatatctagaa |
619 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45882018 |
tacatgactatattatccttcacatactttcattttttaaggtcaaagatgccgttgttggaacttgcattttgtccccaagatgcaaggatatctagaa |
45881919 |
T |
|
| Q |
620 |
acaacttccaaatcttacattctattcttatgactttcaaacattcaagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatc |
719 |
Q |
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| T |
45881918 |
acaacttccaaatcttacattctattcttatgactttcaaacattcaagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatc |
45881819 |
T |
|
| Q |
720 |
acactccacactctagattgttgcaagtgtggttgaattgagcctcgcctactcaaaaaggttgtgaattatgctatttcacaatgtcctgcacttagga |
819 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45881818 |
acactccacactctagattgttgcaagtgtggttgaattgagcctcgcctactcaaaaaggttgtgaattatgctatttcacaatgtcctgcacttagga |
45881719 |
T |
|
| Q |
820 |
ctccattattatctgtg |
836 |
Q |
| |
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||||||||| ||||||| |
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| T |
45881718 |
ctccattatcatctgtg |
45881702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 328 - 802
Target Start/End: Complemental strand, 45857178 - 45856708
Alignment:
| Q |
328 |
aatttcagaagctcgatatagaattgcataattacttgtattgaagaaaattattccgtgttgttttaagcttttatgattattaggtattataacctga |
427 |
Q |
| |
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||||||| |||||| ||||||||||||||||||||||||||| |||||||||||| || ||||||||| || |||||||||||| ||||||||| |||| |
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| T |
45857178 |
aatttcaaaagctccttatagaattgcataattacttgtattgtagaaaattattctgtattgttttaacctcttatgattattatgtattataatctga |
45857079 |
T |
|
| Q |
428 |
atgtctaattgatctgatgagggcatcatcccaccaccgatgaagagattaatgctcagcgcgagtgaaaacgtagatagactcaagtgacttacatgac |
527 |
Q |
| |
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|||||||||| | |||| ||| ||| | |||||| || ||||||||||| ||||| || |||||||||| ||||||||||| |||||||||||||| |
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| T |
45857078 |
atgtctaattcagctgaggagatcatgaacccaccgtcgtcgaagagattaaagctcaacgatagtgaaaacgaagatagactca-gtgacttacatgac |
45856980 |
T |
|
| Q |
528 |
tatattatccttcacatactgtcattttttaaggtcaaagatgctgttgttggaacttgcattttgtccccaagatgcaaggatatctagaaacaacttc |
627 |
Q |
| |
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||||||||||| ||||||||||| ||| | || | ||||| || |||| |||||||||||||||||||||||| ||||||| ||| ||||||||||| |
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| T |
45856979 |
tatattatcctccacatactgtcttttctgaacgctaaagacgcggttg---gaacttgcattttgtccccaagatacaaggatctctggaaacaacttc |
45856883 |
T |
|
| Q |
628 |
caaatcttacattctattcttatgactttcaaacattcaagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacactcca |
727 |
Q |
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||||||||||||| | ||| |||||||||| ||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||| |
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| T |
45856882 |
caaatcttacattgtgttcctatgactttcgaactttcaagatattcaccaactttgtgtctaaggttttatctcttcgtgattcctctatcgcactcca |
45856783 |
T |
|
| Q |
728 |
cactctagattgttgcaagtgtggttgaattgagcctcgcctactcaaaaaggttgtgaattatgctatttcaca |
802 |
Q |
| |
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| ||||||| | || |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45856782 |
cgctctagaatattccaagagtggttgcattgagcctcgccaactcaaaaaggttgtgaattatgctatttcaca |
45856708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 338 - 539
Target Start/End: Complemental strand, 45851070 - 45850873
Alignment:
| Q |
338 |
gctcgatatagaattgcataattacttgtattgaagaaaattattccgtgttgttttaagcttttatgattattaggtattataacctgaatgtctaatt |
437 |
Q |
| |
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||||| ||||||||||||||||||||||||||| ||||||| ||| || ||||||||| |||| |||||||||||||||||||| |||||||||||||| |
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| T |
45851070 |
gctcgttatagaattgcataattacttgtattgcagaaaatcattttgtattgttttaaccttt-atgattattaggtattataatctgaatgtctaatt |
45850972 |
T |
|
| Q |
438 |
gatctgatgagggcatcatcccaccaccgatgaagagattaatgctcagcgcgagtgaaaacgtagatagactcaagtgacttacatgactatattatcc |
537 |
Q |
| |
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|||||||| ||| | |||||||| | ||||||||||| ||||| | ||||| |||| |||||||||| ||||||||||||||||||||||||| |
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| T |
45850971 |
ccactgatgagatcatgaacccaccacagtcgaagagattaaagctca--acaagtgagaacgaagatagactc-agtgacttacatgactatattatcc |
45850875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 651 - 718
Target Start/End: Complemental strand, 2996459 - 2996392
Alignment:
| Q |
651 |
gactttcaaacattcaagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctat |
718 |
Q |
| |
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||||||| ||| | ||||| |||||||||||||||||| |||||||||||||| | ||||||||||| |
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| T |
2996459 |
gactttcgaacttacaagaaattcaccaaatttgtgtctaaggttttatctctttgcgattcctctat |
2996392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 659 - 738
Target Start/End: Original strand, 20948801 - 20948880
Alignment:
| Q |
659 |
aacattcaagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacactccacactctagatt |
738 |
Q |
| |
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||||| ||||||||||||||| |||||||| ||| |||||||||| ||||| |||||||| || | |||||||| |||| |
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| T |
20948801 |
aacatacaagatattcaccaagtttgtgtctaagattttatctcttcgtgatccctctatcgcaatacacactcttgatt |
20948880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 665 - 722
Target Start/End: Original strand, 20949498 - 20949555
Alignment:
| Q |
665 |
caagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcaca |
722 |
Q |
| |
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|||||||||||||||||| ||||| || |||||||||| ||||||||||||||||| |
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| T |
20949498 |
caagatattcaccaaattcgtgtctaaaattttatctctttgtgattcctctatcaca |
20949555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 663 - 724
Target Start/End: Complemental strand, 20981867 - 20981806
Alignment:
| Q |
663 |
ttcaagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacact |
724 |
Q |
| |
|
|||||||||||||||| ||| ||||| ||| |||||||||| |||||||||||||| |||| |
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| T |
20981867 |
ttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcact |
20981806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 663 - 724
Target Start/End: Complemental strand, 20995026 - 20994965
Alignment:
| Q |
663 |
ttcaagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacact |
724 |
Q |
| |
|
|||||||||||||||| ||| ||||| ||| |||||||||| |||||||||||||| |||| |
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| T |
20995026 |
ttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcact |
20994965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 643 - 724
Target Start/End: Complemental strand, 45870467 - 45870386
Alignment:
| Q |
643 |
attcttatgactttcaaacattcaagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacact |
724 |
Q |
| |
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||||| ||||||||| ||| | ||||||||||||| |||||| || | ||||||||||||| | |||||||||||| |||| |
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| T |
45870467 |
attctgatgactttcgaacttataagatattcaccagatttgtttctagggttttatctctccgggattcctctatctcact |
45870386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 722
Target Start/End: Original strand, 20977482 - 20977539
Alignment:
| Q |
665 |
caagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcaca |
722 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||||||||| | |||||||| |||||| |
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|
| T |
20977482 |
caagatattcaccaaattcgtgtctaagattttatctcttcgcgattcctccatcaca |
20977539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 733
Target Start/End: Complemental strand, 44501417 - 44501338
Alignment:
| Q |
654 |
tttcaaacattcaagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacactccacactct |
733 |
Q |
| |
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||||| || ||||||||||||| ||||| ||||| |||||||||||||| |||||||||||| |||| |||||||| |
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| T |
44501417 |
tttcacactttcaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactct |
44501338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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