View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15444_low_11 (Length: 338)

Name: NF15444_low_11
Description: NF15444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15444_low_11
NF15444_low_11
[»] chr2 (4 HSPs)
chr2 (13-331)||(14742294-14742612)
chr2 (60-254)||(14735980-14736164)
chr2 (13-62)||(14735825-14735874)
chr2 (101-214)||(14997031-14997140)
[»] chr1 (1 HSPs)
chr1 (273-314)||(36604777-36604818)
[»] chr6 (1 HSPs)
chr6 (227-259)||(14873001-14873033)
[»] chr5 (1 HSPs)
chr5 (231-259)||(36762781-36762809)
[»] chr3 (2 HSPs)
chr3 (227-259)||(37183064-37183096)
chr3 (227-259)||(41864963-41864995)


Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 331
Target Start/End: Original strand, 14742294 - 14742612
Alignment:
Q  13 tcaagctgcactcaacacatgacacaaaatatgttcaaaattaataacatatcagcaaatttattcttgacaaagataatcacttgaaagaaattagaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14742294 tcaagctgcactcaacacatgacacaaaatatgttcaaaattagtaacatatcagcaaatttattcttgacaaagataatcacttgaaagaaactagaat 14742393  T
Q  113 acaatttgtaaaaacaaacaaatgagatattgtataagaaggaaacaggatgttccttcattcctatatgcatcataattgctagattggataacaagat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14742394 acaatttgtaaaaacaaacaaatgagatattgtataagaaggaaacaggatgttccttcattcctatatgcatcataattgttagattggataacaagat 14742493  T
Q  213 taattaaaatatgataaaaattaaagagtaaattacactcccctccctccccttttaaatttatgttaaaatatacacttccctccttctaaaagtgaaa 312  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||    
T  14742494 taattaaaatatgataacaattaaagagtaaattacactcccctccctccccttttaaatttatgttaacatatacacttccctccctttaaaagtgaaa 14742593  T
Q  313 ttaattcccttctcctatg 331  Q
    |||||||||||||||||||    
T  14742594 ttaattcccttctcctatg 14742612  T

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Target: chr2; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 60 - 254
Target Start/End: Original strand, 14735980 - 14736164
Alignment:
Q  60 catatcagcaaatttattcttgacaaagataatcacttgaaagaaattagaatacaatttgtaaaaacaaacaaatgagatattgtataagaaggaaaca 159  Q
    |||| ||||||||||||||||||||||||||||| ||||| | ||||||| |          ||||||||||||||||||||| ||||||||||||||||    
T  14735980 catagcagcaaatttattcttgacaaagataatcccttgacataaattagta----------aaaaacaaacaaatgagatatcgtataagaaggaaaca 14736069  T
Q  160 ggatgttccttcattcctatatgcatcataattgctagattggataacaagattaattaaaatatgataaaaattaaagagtaaattacactccc 254  Q
     ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  14736070 agatgttccttcattcctctatgcatcagaattgctagattggataacaagattaattaaaatatgataaaaataaaagattaaattacactccc 14736164  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 14735825 - 14735874
Alignment:
Q  13 tcaagctgcactcaacacatgacacaaaatatgttcaaaattaataacat 62  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  14735825 tcaagctgcactcaacacatgacacaaaaaatgttcaaatttaataacat 14735874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 14997140 - 14997031
Alignment:
Q  101 agaaattagaatacaatttgtaaaaacaaacaaatgagatattgtataagaaggaaacaggatgttccttcattcctatatgcatcataattgctagatt 200  Q
    |||||||||||| ||||| || ||  ||| |||||||||||||  | |||||||||| | ||||||  ||||||| | | || |||| || |||||||||    
T  14997140 agaaattagaatgcaattagtgaa--caagcaaatgagatatt--acaagaaggaaaaatgatgttgattcattcatctttggatcacaaatgctagatt 14997045  T
Q  201 ggataacaagatta 214  Q
    ||||||||||||||    
T  14997044 ggataacaagatta 14997031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 36604777 - 36604818
Alignment:
Q  273 ttatgttaaaatatacacttccctccttctaaaagtgaaatt 314  Q
    ||||||||||||||||||||||||||||  |||||| |||||    
T  36604777 ttatgttaaaatatacacttccctcctttgaaaagtaaaatt 36604818  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 259
Target Start/End: Original strand, 14873001 - 14873033
Alignment:
Q  227 taaaaattaaagagtaaattacactcccctccc 259  Q
    |||||| ||||||||||||||||||||||||||    
T  14873001 taaaaaataaagagtaaattacactcccctccc 14873033  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 259
Target Start/End: Complemental strand, 36762809 - 36762781
Alignment:
Q  231 aattaaagagtaaattacactcccctccc 259  Q
    |||||||||||||||||||||||||||||    
T  36762809 aattaaagagtaaattacactcccctccc 36762781  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 259
Target Start/End: Original strand, 37183064 - 37183096
Alignment:
Q  227 taaaaattaaagagtaaattacactcccctccc 259  Q
    |||||||| ||||||||||||||||||||||||    
T  37183064 taaaaattgaagagtaaattacactcccctccc 37183096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 259
Target Start/End: Original strand, 41864963 - 41864995
Alignment:
Q  227 taaaaattaaagagtaaattacactcccctccc 259  Q
    ||||||| |||||||||||||||||||||||||    
T  41864963 taaaaataaaagagtaaattacactcccctccc 41864995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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