View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15444_low_13 (Length: 267)
Name: NF15444_low_13
Description: NF15444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15444_low_13 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 10391286 - 10391538
Alignment:
| Q |
15 |
aaaggcaagcaaaacaaactttgaatcagattccaaccaaaaatttctccaaccgctattattatgaattttaattgctagcattgtagtttagagttct |
114 |
Q |
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| T |
10391286 |
aaaggcaagcaaaacaaactttgaatcagattccaaccaaaaatttctccaacctctattattatcaattttaattgctagcattgtagtttagagttct |
10391385 |
T |
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| Q |
115 |
gcaaaaagagtagcaccaaggcctaagtttgagcaaaacaaccaatacatatgctttctttatacatgaagatcccactagttgctgcttgatcatgatt |
214 |
Q |
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| T |
10391386 |
gcaaaaagagtagcaccagggcctaagtttgagcaaaacaaccaatacatatgctttttttatacatgaagatcccactagttgctgcttgatcatgatt |
10391485 |
T |
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| Q |
215 |
ctttatacagtggagattgggaagcaaccagatcacttccttgatgataggag |
267 |
Q |
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| T |
10391486 |
ctttatacagtggagattgggaagcaaccagatcacttccttgatgacaggag |
10391538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 10402993 - 10403059
Alignment:
| Q |
153 |
caaccaatacatatgctttctttatacatgaagatcccactagttgctgcttgatcatgattcttta |
219 |
Q |
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| T |
10402993 |
caaccaatacatatgctttctttattcatgaagatgccactaattgctgcttgatcatgattcttta |
10403059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 10402944 - 10402997
Alignment:
| Q |
15 |
aaaggcaagcaaaacaaactttgaatcagattccaaccaaaaatttctccaacc |
68 |
Q |
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| T |
10402944 |
aaaggcaagcaaaataaactttgaatcagattccaaccaaaaatttctccaacc |
10402997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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