View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15444_low_14 (Length: 251)
Name: NF15444_low_14
Description: NF15444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15444_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 21434315 - 21434537
Alignment:
| Q |
19 |
cttggattattagtgagggtttttcctgattattggtaaacttggtgttttaatgaaccattcctctaaagtttattctctatattccaagctcatagtt |
118 |
Q |
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| T |
21434315 |
cttggattattagtgagggtttttcctgattattggtaaacttggtgttttaatgaaccattcctctaaagtttattctctatattccaagctcatagtt |
21434414 |
T |
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| Q |
119 |
tcaaatgtgctaaatatatatccacttaatgattcagaagtcgccac-ttttatagaaaatgtatgaaaatgttgctaacaaatgttgtaggtatggcgg |
217 |
Q |
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| T |
21434415 |
tcaaatgtgctaaatatatatccacttaatgattcagaagtcgccactttttatagaaaatgtatgaaaatgttgctaacaaatgttgtaggtatggcgg |
21434514 |
T |
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| Q |
218 |
atgcataaagataatctgatatt |
240 |
Q |
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| T |
21434515 |
atgcataaagataatctgatatt |
21434537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 27153196 - 27153358
Alignment:
| Q |
69 |
taatgaaccattcctctaaagtttattctctatattccaagctcatagtttcaaatgtgctaaatatatatccacttaa----tgattcagaagtcgcca |
164 |
Q |
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| T |
27153196 |
taatgaaccattcctctaaagtttattctctaaatacccagctcatagtttcaaatgtgctaaagatctatccacttaattaatgattcagaagtcacta |
27153295 |
T |
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| Q |
165 |
-cttttatagaaaatgtatgaaaatgttgctaacaaatgttgtaggtatggcggatgcataaagataatctga |
236 |
Q |
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| T |
27153296 |
ccttttat----------tgaaaatgttgctaacaaatgttgtaggtatggcagaagcacaaagataatctga |
27153358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 26990180 - 26990263
Alignment:
| Q |
71 |
atgaaccattcctctaaagtttattctctatattccaagctcatagtttcaaatgtgctaaatatatatccacttaatgattca |
154 |
Q |
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| T |
26990180 |
atgaatcattcctctaaagtttattctctatagacaaagttcatagattcaaatgtgcaaaagatctatccatttaatgattca |
26990263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 26990122 - 26990154
Alignment:
| Q |
37 |
gtttttcctgattattggtaaacttggtgtttt |
69 |
Q |
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| T |
26990122 |
gtttttcctgattattggttaacttggtgtttt |
26990154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 27029087 - 27029123
Alignment:
| Q |
66 |
ttttaatgaaccattcctctaaagtttattctctata |
102 |
Q |
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| T |
27029087 |
ttttaatgaatcattcctctaaattttattctctata |
27029123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 34692242 - 34692325
Alignment:
| Q |
71 |
atgaaccattcctctaaagtttattctctatattccaagctcatagtttcaaatgtgctaaatatatatccacttaatgattca |
154 |
Q |
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| T |
34692242 |
atgaatcattcctctaaagtttattctctatagacaaagttcatagattcaaatgtgcaaaagatctatccatttaatgattca |
34692325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 34692184 - 34692216
Alignment:
| Q |
37 |
gtttttcctgattattggtaaacttggtgtttt |
69 |
Q |
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| T |
34692184 |
gtttttcctgattattggttaacttggtgtttt |
34692216 |
T |
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