View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15444_low_17 (Length: 221)
Name: NF15444_low_17
Description: NF15444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15444_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 25710984 - 25711170
Alignment:
| Q |
15 |
caaaggccatcaatcaaacaattgcatatcacaacatcaagtttacaactctcctctttccacatcccattgaacaacttcaaagcagttcccaatttcc |
114 |
Q |
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| T |
25710984 |
caaagaccatcaatcaaacaattgaatatcacaacatcaggtttacaactctcctctt-ccacatcccattgaacaacttcaaagcagttcccaatttcc |
25711082 |
T |
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| Q |
115 |
ctttcttagtcatcgccttaataaaagttgcatacgtgaaaatatcaggcttacatttatacgcaattatatctttccacaacctctt |
202 |
Q |
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| T |
25711083 |
ctttcttagtcatcgccttaataaaagttgcatatgtgaaaatatcaggcttacatttatacgcaattatatctttccacaacctctt |
25711170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 32883314 - 32883133
Alignment:
| Q |
21 |
ccatcaatcaaacaattgcatatcacaacatcaagtttacaactctcctctttccacatcccattgaacaacttcaaagcagttcccaatttccctttct |
120 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||| |
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| T |
32883314 |
ccatcaatcacacaattgcatatcacaacatcaggtttacaactctcctctttccacattctgttgaacaactttaaagcagttcccaatttccctttct |
32883215 |
T |
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| Q |
121 |
tagtcatcgccttaataaaagttgcatacgtgaaaatatcaggcttacatttatacgcaattatatctttccacaacctctt |
202 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32883214 |
tagtcatcgccttaataaaagttgcatatgtgaaaatatcaggcttacatttatatgcaattatatctttccacaacctctt |
32883133 |
T |
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