View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15444_low_6 (Length: 423)
Name: NF15444_low_6
Description: NF15444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15444_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 133 - 411
Target Start/End: Original strand, 5161241 - 5161519
Alignment:
| Q |
133 |
atggcgaactatacttggaagtgcagttcagaacaaagcattacgattacttttacaaaggtaaaatcctagagaacatgacaggattggatttatcatg |
232 |
Q |
| |
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||||||||||| ||||||||||| |||||||||||||||| | ||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| |
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| T |
5161241 |
atggcgaactacacttggaagtggagttcagaacaaagcacaatgattacttttacaaaggtaaagtcctagagaaaatgactggattggatttatcatg |
5161340 |
T |
|
| Q |
233 |
caataagctaacaggtatcatcccttctcaaattggaaaccttcaacaaattagagccttgaacctatcacataattacttgtcaggtcctattccaatt |
332 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||| |||| |||||| || |||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
5161341 |
caacaagctaacaggtactatcccttctcaaattgggcacctgcaacaagttttagccttgaacctatcacataatcacttgtcgggtcctattccaatt |
5161440 |
T |
|
| Q |
333 |
actttttcaaatcttaccaaaatagagagccttgacttatcatacaataacttgagtggtaagataccttatgaactaa |
411 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5161441 |
acgttttcaaatcttaccgaaatagagagccttgacttatcatacaataacttgagtggtaagataccttatgagctaa |
5161519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 150 - 411
Target Start/End: Complemental strand, 4855829 - 4855568
Alignment:
| Q |
150 |
gaagtgcagttcagaacaaagcattacgattacttttacaaaggtaaaatcctagagaacatgacaggattggatttatcatgcaataagctaacaggta |
249 |
Q |
| |
|
|||||| |||||||||||||||| || || ||||||||||| |||||| | |||||||| ||||| ||||||||||||||||| ||||| ||||||||| |
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|
| T |
4855829 |
gaagtggagttcagaacaaagcactatgaatacttttacaagggtaaagttctagagaatatgactggattggatttatcatggaataacctaacaggtg |
4855730 |
T |
|
| Q |
250 |
tcatcccttctcaaattggaaaccttcaacaaattagagccttgaacctatcacataattacttgtcaggtcctattccaattactttttcaaatcttac |
349 |
Q |
| |
|
||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
4855729 |
tcatcccttctcaaattggtcaccttcaaccagttagagccttgaacctatcacataatcacttgtctggtcctattccaattactttttcaaatcttac |
4855630 |
T |
|
| Q |
350 |
caaaatagagagccttgacttatcatacaataacttgagtggtaagataccttatgaactaa |
411 |
Q |
| |
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| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4855629 |
ccaaatagaaagccttgacttatcatacaataacttgagtggtaagataccttatgaactaa |
4855568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 150 - 411
Target Start/End: Original strand, 5183541 - 5183802
Alignment:
| Q |
150 |
gaagtgcagttcagaacaaagcattacgattacttttacaaaggtaaaatcctagagaacatgacaggattggatttatcatgcaataagctaacaggta |
249 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||||||||| |||| | | ||| ||| |||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
5183541 |
gaagtgcagtttagaacaaagcactatgattacttttacaagggtatagttctaaagatcatgactggattggatttatcatgcaataagctaacaggtg |
5183640 |
T |
|
| Q |
250 |
tcatcccttctcaaattggaaaccttcaacaaattagagccttgaacctatcacataattacttgtcaggtcctattccaattactttttcaaatcttac |
349 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |
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|
| T |
5183641 |
tcatcccttctcaaattggagacctacaacaaattaaagccttgaatctatcacataattacttgtctggtcctattccaataactttttcaaaacttac |
5183740 |
T |
|
| Q |
350 |
caaaatagagagccttgacttatcatacaataacttgagtggtaagataccttatgaactaa |
411 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
5183741 |
ccaaatagagagccttgacttatcatacaataacttgagtggtaagattccttatgaactaa |
5183802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 147 - 411
Target Start/End: Original strand, 5196937 - 5197201
Alignment:
| Q |
147 |
ttggaagtgcagttcagaacaaagcattacgattacttttacaaaggtaaaatcctagagaacatgacaggattggatttatcatgcaataagctaacag |
246 |
Q |
| |
|
||||||||| |||||||||||||||| || || ||||||||||| |||||| | |||||||| ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
5196937 |
ttggaagtggagttcagaacaaagcactatgaatacttttacaagggtaaagttctagagaatatgactggattggatttatcatgcaataagctaacag |
5197036 |
T |
|
| Q |
247 |
gtatcatcccttctcaaattggaaaccttcaacaaattagagccttgaacctatcacataattacttgtcaggtcctattccaattactttttcaaatct |
346 |
Q |
| |
|
|| |||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |||||||||||||| |
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|
| T |
5197037 |
gtgtcatcccttctcaaattggagacctacaacaaattagagccttgaatctatcacataatcacttgtcaggtcccattccaatcactttttcaaatct |
5197136 |
T |
|
| Q |
347 |
taccaaaatagagagccttgacttatcatacaataacttgagtggtaagataccttatgaactaa |
411 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
5197137 |
tacccaaatagagagtcttgacttatcatacaatgacttgagtggtaagatacccaatgaactaa |
5197201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 157 - 411
Target Start/End: Original strand, 5215092 - 5215346
Alignment:
| Q |
157 |
agttcagaacaaagcattacgattacttttacaaaggtaaaatcctagagaacatgacaggattggatttatcatgcaataagctaacaggtatcatccc |
256 |
Q |
| |
|
|||||||||||||||| || || ||||||||||| |||||| | |||||||| ||||| ||||||||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
5215092 |
agttcagaacaaagcactatgaatacttttacaagggtaaagttctagagaatatgactggattggatttatcatggaataacctaacaggtctcatccc |
5215191 |
T |
|
| Q |
257 |
ttctcaaattggaaaccttcaacaaattagagccttgaacctatcacataattacttgtcaggtcctattccaattactttttcaaatcttaccaaaata |
356 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
5215192 |
ttctcaaattggtcaccttcaacaagttagagccttgaacctatcacataatcacttgtctggtcctattccaattactttttcaaatcttacccaaata |
5215291 |
T |
|
| Q |
357 |
gagagccttgacttatcatacaataacttgagtggtaagataccttatgaactaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5215292 |
gagagccttgacttatcatacaataacttgagtggtaagataccaaatgaactaa |
5215346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 150 - 411
Target Start/End: Original strand, 5174199 - 5174460
Alignment:
| Q |
150 |
gaagtgcagttcagaacaaagcattacgattacttttacaaaggtaaaatcctagagaacatgacaggattggatttatcatgcaataagctaacaggta |
249 |
Q |
| |
|
|||||| |||||||||||||||| | || |||| |||||| |||| | | |||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5174199 |
gaagtggagttcagaacaaagcacaatgaatactcttacaagggtatagttctagagaatatgactggattggatttatcatgcaataagctaacaggtg |
5174298 |
T |
|
| Q |
250 |
tcatcccttctcaaattggaaaccttcaacaaattagagccttgaacctatcacataattacttgtcaggtcctattccaattactttttcaaatcttac |
349 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| ||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
5174299 |
tcatcccttctcaaattggagacctacaacaaattagagccttgaatctatcacataatcacttgtctggtcccattccaatcactttttcaaatcttac |
5174398 |
T |
|
| Q |
350 |
caaaatagagagccttgacttatcatacaataacttgagtggtaagataccttatgaactaa |
411 |
Q |
| |
|
| |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
5174399 |
ccaaatagagagtcttgacttatcatacaatgacttgagtggtaagatacccaatgaactaa |
5174460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 150 - 411
Target Start/End: Complemental strand, 4841323 - 4841062
Alignment:
| Q |
150 |
gaagtgcagttcagaacaaagcattacgattacttttacaaaggtaaaatcctagagaacatgacaggattggatttatcatgcaataagctaacaggta |
249 |
Q |
| |
|
|||||| |||| ||||||||||| | || ||||||||||| |||||| | ||||||| ||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
4841323 |
gaagtggagtttagaacaaagcacaatgaatacttttacaagggtaaagttctagagattatgactggattggatttatcatgcaataatttaacaggtg |
4841224 |
T |
|
| Q |
250 |
tcatcccttctcaaattggaaaccttcaacaaattagagccttgaacctatcacataattacttgtcaggtcctattccaattactttttcaaatcttac |
349 |
Q |
| |
|
| |||||||| ||||||||| |||| |||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
4841223 |
ttatcccttcccaaattggagacctacaacaaattagagccttgaatctatcacataatcacttgtcaggtcccattccaatcactttttcaaatcttac |
4841124 |
T |
|
| Q |
350 |
caaaatagagagccttgacttatcatacaataacttgagtggtaagataccttatgaactaa |
411 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4841123 |
ccaaatagagagtcttgacttatcatacaataacttgagtggtaagataccaaatgaactaa |
4841062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 154 - 395
Target Start/End: Original strand, 7143408 - 7143649
Alignment:
| Q |
154 |
tgcagttcagaacaaagcattacgattacttttacaaaggtaaaatcctagagaacatgacaggattggatttatcatgcaataagctaacaggtatcat |
253 |
Q |
| |
|
||||||| ||||||||| | || || ||||||||| | | |||||||||||||| ||||| |||||||||||||||||||||| |||| | |||| |
|
|
| T |
7143408 |
tgcagtttagaacaaagaactatgagtacttttacgacgctaaaatcctagagatgatgactggattggatttatcatgcaatatcgtaactagagtcat |
7143507 |
T |
|
| Q |
254 |
cccttctcaaattggaaaccttcaacaaattagagccttgaacctatcacataattacttgtcaggtcctattccaattactttttcaaatcttaccaaa |
353 |
Q |
| |
|
|||||| || ||||| || | ||| | | ||| |||||| |||| ||||||| |||||||||||||||||||||| |||||||| ||||||||| || |
|
|
| T |
7143508 |
accttctgaacttggagacatgcaaaaccatcgagtcttgaatctataacataatcacttgtcaggtcctattccaatcactttttccaatcttacccaa |
7143607 |
T |
|
| Q |
354 |
atagagagccttgacttatcatacaataacttgagtggtaag |
395 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||| ||||||| |
|
|
| T |
7143608 |
atagagagtcttgacttatcatagagtaacttgaatggtaag |
7143649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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