View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15444_low_8 (Length: 386)
Name: NF15444_low_8
Description: NF15444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15444_low_8 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 87 - 386
Target Start/End: Original strand, 32638169 - 32638472
Alignment:
| Q |
87 |
taaattaaaagcatattcacgaggccttttacaaatatcatgtggattattaatagtggtcatgatgattgttatgttttacaaatattcataggtccca |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32638169 |
taaattaaaagcatattcacgaggccttttacaaatatcatgtggatta---atagtggtcatgatgatttttatgttttacaaatattcataggtccca |
32638265 |
T |
|
| Q |
187 |
atatcattcattacctttggtgaatg-------ggggatgcaaaagctctaacacaactcctactttaacttctgtcattaaaggtaaaatttacataaa |
279 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32638266 |
atatcattcattacctttggtgaatgaattatgggggatgcaaaagctctaacacaactactactttaacttctgtcattaaagttaaaatttacataaa |
32638365 |
T |
|
| Q |
280 |
aggattacaactattctatctattcacttggaattatccaaatacatgaaaaaagttatatgcttttcttctttaaccaccactttgtaatgtgacagct |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32638366 |
aggattacaactattctatctattcacttggaattatccaaatacatgaaaaaagttatatgcttttcttctttaaccaccactttgtaatgtgacagct |
32638465 |
T |
|
| Q |
380 |
tcatgtc |
386 |
Q |
| |
|
||||||| |
|
|
| T |
32638466 |
tcatgtc |
32638472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 8019362 - 8019405
Alignment:
| Q |
266 |
aaaatttacataaaaggattacaactattctatctattcacttg |
309 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||| ||||| |
|
|
| T |
8019362 |
aaaatttacataaaagcattacaactattttatctattaacttg |
8019405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University