View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15444_low_9 (Length: 376)
Name: NF15444_low_9
Description: NF15444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15444_low_9 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 48952663 - 48953017
Alignment:
| Q |
18 |
gttctttctttggcgtaaggaagattcaaattaatcaacacgcttcctctaatttcaaataatatgatgtgacgtgatccccatccccaatctctttctt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||| |
|
|
| T |
48952663 |
gttctttctttggcgtaaggaagattcaaattaatcaacacgcttcctctaatttcaaataatatgatgtgacgtgatccccaatctca----ctttctt |
48952758 |
T |
|
| Q |
118 |
ggaattaaactctatttcacgccccaacttccactccaccgcccttacaaagtaacaacagaatacgcgcaaaatcatgtcttatatgggtggcaccttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48952759 |
ggaattaaactctatttcacgccccaacttccactccaccgcccttacaaagtaacaacagaatacgcgcaaaatcatgtcttatatgggtggcaccttc |
48952858 |
T |
|
| Q |
218 |
ttatatatatgcacaacataatcagaatcataaaaatattccacaataccttccaaatacagattgcaattcaaacctagctattgctttcttgccttac |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48952859 |
ttatatatatgcacaacataatcagcatcataaaaatattccacaataccttccaaatacagattgcaattcaaacctagctattgctttcttgccttac |
48952958 |
T |
|
| Q |
318 |
aaaccttaatcacttggaagattttcattcaagtcctagaaaatgcaagcaacatttat |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48952959 |
aaaccttaatcacttggaagattttcattcaagtcctagaaaatgcaagcaacatttat |
48953017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University