View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15445_high_1 (Length: 848)
Name: NF15445_high_1
Description: NF15445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15445_high_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 765; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 765; E-Value: 0
Query Start/End: Original strand, 8 - 848
Target Start/End: Original strand, 43392370 - 43393203
Alignment:
| Q |
8 |
cagaacctgtgacatataaatacatgcatattctataatagtttttctatgccataatttcaaccaacaatagagaaaatggttgaaagagagtgtgttg |
107 |
Q |
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| T |
43392370 |
cagaacctgtgacatataaatacatgcatattctataatagtttttctatgccataatttcaaccaacaatagagaaaatggttgaaagagagtgtgttg |
43392469 |
T |
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| Q |
108 |
gcaacagttctcttcaattgaaactctatacaaccctaacattgacggatgttcataaattcatgtcatcaacaactgtacggtcaaagtataggcaaaa |
207 |
Q |
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| T |
43392470 |
gcaacagttctcttcaattgaaactctatacaaccctaacattgacggatgttcataaattcatgtcatcaacaattgtacggtcaaagtataggcaaaa |
43392569 |
T |
|
| Q |
208 |
tgtgggtgtctgtgtgtctgagctaactatttgagtttaacatctgtttcattatgttttctttttcatatgcaattaa-ttatataaagaactttttct |
306 |
Q |
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| T |
43392570 |
tgtg--------tgtgtctgagctaactatttgagtttaacatctgtttcattacgttttctttttcatatgcaattaaattatataaagaactttttct |
43392661 |
T |
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| Q |
307 |
agtaaagaatttattgagccattcaaaacacaccttgtatttacaactagcttgaccttgtgattttcaaatatttttgctaatttaactaaaatgttct |
406 |
Q |
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| T |
43392662 |
agtaaagaatttattgagccattcaaaacacacctcgtatttacaactagcttgaccttgtgattttcaaatatttttgctaatttaactaaaatgttct |
43392761 |
T |
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| Q |
407 |
tcaaagtactatacatttacaaaaatgatcactatcacatcaccgagacatttgtgatcatgcctcggataaaacatcaagacacacagagaatttgaga |
506 |
Q |
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| T |
43392762 |
tcaaagtacaatacatttacaaaaatgatcactatcacatcaccaagacatttgtgatcatgcctcggagaaaacatcaagacacacagagaatttgaga |
43392861 |
T |
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| Q |
507 |
agacgataacaagcagataaaaactcactgattgtaaaacaactgaacatcttttcgagtgctgaagaaagttccctataagagctaaaaccattcagat |
606 |
Q |
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| T |
43392862 |
agacgataacaagcagataaaaactcactgattgtaaaacaactgaacatcttttcgagtgctgaagaaagctccctataagagctaaaaccattcagat |
43392961 |
T |
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| Q |
607 |
ccactttcctcaagtatggagcaccttccatgctgacttttacatatagacattcagatttggcttctgcatcagcatcattcttttgaggctgtgaaac |
706 |
Q |
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| T |
43392962 |
ccactttcctcaagtatggagcaccttccatgctgacttttacatataggcattcagacttggcttctgcatcagcatcattcttttgaggctgtgaaac |
43393061 |
T |
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| Q |
707 |
cattgagttcttcctgaaagatcggattggaggccatcccacaacttgcgccctgattcacataaaaaccgtattgagaaaaaagaaatcaattttaaag |
806 |
Q |
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| T |
43393062 |
cattgagttcttcctgaaagatcggattggaggccatcccacaacttgcgccctgattcacataaaaacagtattgagaaaaaagaaatcaattttaaag |
43393161 |
T |
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| Q |
807 |
ccagcgatcataaattcaaaacaaaggaatcaagctaaaaca |
848 |
Q |
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| T |
43393162 |
ccagcgatcataaattcaaaacaaaggaatcaagctaaaaca |
43393203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 8e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 525 - 754
Target Start/End: Complemental strand, 33217887 - 33217655
Alignment:
| Q |
525 |
aaaaactcactgattgtaaaacaactgaacatcttttcgagtgctgaagaaagttccctataagagctaaaaccattcagatccactttcctcaagtatg |
624 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||| | |||| || |||| || |||||||||||||||||||||| |
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| T |
33217887 |
aaaaactcactgattgtaaaacaactaaacatcttttctagtgcagaagatagttccttgtaagtgccaaaaattttgagatccactttcctcaagtatg |
33217788 |
T |
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| Q |
625 |
gagcaccttccatgctgacttttacatatagacattcagatttggcttctgcatcagc---atcattcttttgaggctgtgaaaccattgagttcttcct |
721 |
Q |
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||||||| |||||||| ||||||||||| || ||| |||||||||||||| ||||| | |||||||||||||| || | ||||||| |||||||| |
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| T |
33217787 |
gagcaccatccatgctaacttttacataaaggcatccagatttggcttctacatcatcattatcattcttttgagattgagtggccattgaattcttcct |
33217688 |
T |
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| Q |
722 |
gaaagatcggattggaggccatcccacaacttg |
754 |
Q |
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|||||| |||||||| |||||||| |||||||| |
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| T |
33217687 |
gaaagaacggattggtggccatcctacaacttg |
33217655 |
T |
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