View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15445_low_10 (Length: 302)

Name: NF15445_low_10
Description: NF15445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15445_low_10
NF15445_low_10
[»] chr6 (1 HSPs)
chr6 (14-302)||(7934657-7934946)


Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 7934946 - 7934657
Alignment:
Q  14 caaaggggagggtatcagtgtggacaattatgc-aaggccattgcatttatataatggatgtacataagacacaacaatgaaaaataagataatgatgaa 112  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7934946 caaaggggagggtatcagtgtggacaattatgtgaaggccattgcatttatataatggatgtacataagacacaacaatgaaaaataagataatgatgaa 7934847  T
Q  113 acatttgtttgtaatggagataaacattgttcccaacaaagcaaactatgcaaaacattggccttaacttttggttaaatattaattcatataatcatca 212  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7934846 acatttgtttgtaatggagacaaacattgttcccaacaaagcaaactatgcaaaacattggccttaacttttggttaaatattaattcatataatcatcc 7934747  T
Q  213 taggtagtcactaaatggtatcttatgaccaattattattttttaatctaaaatctgaatcttatcgagaaacaaagaactcgtctatgg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7934746 taggtagtcactaaatggtatcttatgaccaattattattttttaatctaaaatctgaatcttatcgagaaacaaagaactcgtctatgg 7934657  T

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