View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15445_low_2 (Length: 524)
Name: NF15445_low_2
Description: NF15445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15445_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 5 - 506
Target Start/End: Original strand, 26560327 - 26560820
Alignment:
| Q |
5 |
aagttgataatcaatcatgtagctagatatctaactaggagattaggtgagtgacttcaaatnnnnnnnnnnnnnnnnnagcaccattgtttgtgggtgt |
104 |
Q |
| |
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|||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||| || |||||| | ||| ||||| |
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| T |
26560327 |
aagtcgataatcaatcatgtaagtagatatctagctaggagattaggtgagtgacttcaaatagagagaga--------agaaccattatctgttggtgt |
26560418 |
T |
|
| Q |
105 |
aagattgagtattttagtggctgcctccaaaacccatgattctggggattgatagagagatgaggaagcactgcagcaagacgcaagcatgtcagtgttg |
204 |
Q |
| |
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|||||||||||| || |||||||||||||||||||||||||||||| || |||| |||||||||||||||| ||||| | |||||||||| ||||||| |
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| T |
26560419 |
aagattgagtatcttggtggctgcctccaaaacccatgattctgggaatcgataaagagatgaggaagcaccatagcaaaaagcaagcatgttagtgttg |
26560518 |
T |
|
| Q |
205 |
atgactcctgtattgagtgccaccactgccattcctttaggaaactcttcagcaacagacttggtgagtccttcaatttcccatttggatgcaaagtaag |
304 |
Q |
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||||| |||| |||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||| || |||||| |
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| T |
26560519 |
atgacccctggattgagtgccaccactgccattactttaggcaactcttcaacaacagacttggtaagtccttcaattgcccatttggatacacagtaag |
26560618 |
T |
|
| Q |
305 |
gtgctacgagggcagcacctgatcttccccaacctgaagacatattcactattatccctccctcttcattcttgttctttttaaccatcaaaggaatgaa |
404 |
Q |
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||||||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||||||| ||||| |
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| T |
26560619 |
gtgctacaagtgcagcaactgatcttccccaacctgaagacatgttcactattatccctccctcttcatactttttatttttaaccatcaaaggtatgaa |
26560718 |
T |
|
| Q |
405 |
gtgcctcaacacattgacattacctttcaagttggtatccatcaccaaatcaaactcttcagacaaaacctcccacatcttgttgttcttgttaatgact |
504 |
Q |
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| T |
26560719 |
gggcctcaacacattggcagcacctttcaagttggtatccatcaccaaatcaaactcttcagacggaacctcccacatcttgttgttcttgttaacgact |
26560818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 84 - 503
Target Start/End: Original strand, 24889857 - 24890276
Alignment:
| Q |
84 |
agcaccattgtttgtgggtgtaagattgagtattttagtggctgcctccaaaacccatgattctggggattgatagagagatgaggaagcactgcagcaa |
183 |
Q |
| |
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||||||||||| || ||||||||||||||||| || ||||||||||| || |||||||||||||||||||||| || ||||||||||||| |||| |
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| T |
24889857 |
agcaccattgtctgcaggtgtaagattgagtatcttggtggctgcctctgaagcccatgattctggggattgataaagcgatgaggaagcaccatagcat |
24889956 |
T |
|
| Q |
184 |
gacgcaagcatgtcagtgttgatgactcctgtattgagtgccaccactgccattcctttaggaaactcttcagcaacagacttggtgagtccttcaattt |
283 |
Q |
| |
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|| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
24889957 |
gaagcaagcatgtcagtgttgatgactcctggattcagtgccactactgccattcctttaggcaactcttcagcaacagacttagtgagtccttcaattg |
24890056 |
T |
|
| Q |
284 |
cccatttggatgcaaagtaaggtgctacgagggcagcacctgatcttccccaacctgaagacatattcactattatccctccctcttcattcttgttctt |
383 |
Q |
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| T |
24890057 |
cccatttggatgcacaataaggtgctacaagtgctgcacctgatcttccccaaccagaagacatgttcactattatccctcccatttcattcttgttctt |
24890156 |
T |
|
| Q |
384 |
tttaaccatcaaaggaatgaagtgcctcaacacattgacattacctttcaagttggtatccatcaccaaatcaaactcttcagacaaaacctcccacatc |
483 |
Q |
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| ||| | ||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
24890157 |
ggcgatcattagaggaatgaagtgcctcaacacattggcagtacctttcaagttggtatccatcaccgaatcaaactcttcagagggaacctcccacatc |
24890256 |
T |
|
| Q |
484 |
ttgttgttcttgttaatgac |
503 |
Q |
| |
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|| |||||||||||||||| |
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| T |
24890257 |
ttactgttcttgttaatgac |
24890276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 26563247 - 26562943
Alignment:
| Q |
18 |
atcatgtagctagatatctaactaggagattaggtgagtgacttcaaatnnnnnnnnnnnnnnnnnagcaccattgtttgtgggtgtaagattgagtatt |
117 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26563247 |
atcatgtagctagatttctaactaggagattaggtgagtgacttcaaatagagagaga--------agcaccattgtttgtgggtgtaagattgagtatt |
26563156 |
T |
|
| Q |
118 |
ttagtggctgcctccaaaacccatgattctggggattgatagagagatgaggaagcactgcagcaagacgcaagcatgtcagtgttgatgactcctgtat |
217 |
Q |
| |
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|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |||| ||||||||||||||| |
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| T |
26563155 |
ttggtggcttcctccaaaacccatgattctggggattgatagagagatgaggaagcaccgtagcaagacgcaagtatgttagtgctgatgactcctgtat |
26563056 |
T |
|
| Q |
218 |
tgagtgccaccactgccattcctttaggaaactcttcagcaacagacttggtgagtccttcaatttcccatttggatgcaaagtaaggtgctacgagggc |
317 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26563055 |
tgagtgccatcactgccattcctttaggaaactcttcagcaacagacttggtgagtccttcaatttcccatttggatgcaaagtaaggtgctacgagtgc |
26562956 |
T |
|
| Q |
318 |
agcacctgatctt |
330 |
Q |
| |
|
||||||||||||| |
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| T |
26562955 |
agcacctgatctt |
26562943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 356 - 506
Target Start/End: Complemental strand, 26562944 - 26562794
Alignment:
| Q |
356 |
ttatccctccctcttcattcttgttctttttaaccatcaaaggaatgaagtgcctcaacacattgacattacctttcaagttggtatccatcaccaaatc |
455 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26562944 |
ttatccctccctcttcattcttgttctttttaaccatcaaagaaatgaagtgcctcaacacattgacattacctttcaagttggtatccatcaccaaatc |
26562845 |
T |
|
| Q |
456 |
aaactcttcagacaaaacctcccacatcttgttgttcttgttaatgactcc |
506 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26562844 |
aaactcttcagacaaaacctcccacatcttgttgttcttgttaatgactcc |
26562794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 138 - 497
Target Start/End: Complemental strand, 56437152 - 56436799
Alignment:
| Q |
138 |
ccatgattctggggattgatagagagatgaggaagcactgcagcaagacgcaagcatgtcagtgttgatgactcctgtattgagtgccaccactgccatt |
237 |
Q |
| |
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||||||||| ||||||||||| ||||| | |||||||| ||||||| ||||||||||||||||||||||| || | ||||||||| || || |||||| |
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| T |
56437152 |
ccatgattcaggggattgataaagagaagcggaagcaccaaagcaagaagcaagcatgtcagtgttgatgacaccaggattgagtgcgacaacagccatt |
56437053 |
T |
|
| Q |
238 |
cctttaggaaactcttcagcaacagacttggtgagtccttcaatttcccatttggatgcaaagtaaggtgctacgagggcagcacctgatcttccccaac |
337 |
Q |
| |
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|||| || ||||||| ||| |||||||| |||||||||||||| |||||||||||||| ||||||| || || || || ||||| ||||||||||||| |
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| T |
56437052 |
ccttgtggtaactctttagctacagactttgtgagtccttcaatagcccatttggatgcacagtaaggagcaacaagtgctgcacccgatcttccccaac |
56436953 |
T |
|
| Q |
338 |
ctgaagacatattcactattatccctccctcttcattcttgttctttttaaccatcaaaggaatgaagtgcctcaacacattgacattacctttcaagtt |
437 |
Q |
| |
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| T |
56436952 |
cagaagacaagttaactataatacct-tctcctcctcc-----attgttgatcatgagagggatgaaatgtctcaacacattggcagttcctttcaagtt |
56436859 |
T |
|
| Q |
438 |
ggtatccatcaccaaatcaaactcttcagacaaaacctcccacatcttgttgttcttgtt |
497 |
Q |
| |
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||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| |
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|
| T |
56436858 |
tgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgtt |
56436799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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