View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15445_low_3 (Length: 511)
Name: NF15445_low_3
Description: NF15445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15445_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 494
Target Start/End: Original strand, 43106995 - 43107474
Alignment:
| Q |
16 |
agacattatcaatacaccacacaaacacacaatgatgaagtcagatattcattcctccatatgacaaaaataacaactaacattgatatttgaaagaaga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43106995 |
agacattatcaatacaccacacaaacacacaatgataaagtcagatattcattcctccatataacaaaaataacaactaacattgatatttgaaagaaga |
43107094 |
T |
|
| Q |
116 |
aaaacacacacaattgaaatagaataaagtaggtggaaaaacctctagnnnnnnnnagtaataggaaacaaaaaaccctagtcacaagaagttacacata |
215 |
Q |
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| T |
43107095 |
aaaacgcacacaattgaaatagaataaagtaggtggaaaaacctctagttttttttagtaataggaaacaaaaaaccctagtcacaagaagttacacata |
43107194 |
T |
|
| Q |
216 |
taatataataacataaaa-aatactagtttgattcatcacgtacatcatttagtccaataagacattatcttttgatgttgaatatgaattcatcaattt |
314 |
Q |
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||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43107195 |
taacataataacataaaaaaatactagtttgattcatcacgtacatcatttagtccaataagacattatcttttgatgttgaatatggattcatcaattt |
43107294 |
T |
|
| Q |
315 |
caccagcttcttccttcttttgttattgtcattcttcaattttgtttcatcaatgtcaccaacaagaccactagtactaggtagaacattcttcttctta |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43107295 |
caccagcttcttccttcttttgttattgtcattcttcaattttgtttcatcaatgtcaccaacaagaccactagtactaggtagaacattctccttctta |
43107394 |
T |
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| Q |
415 |
tcttcatcatccaaatcctcatcgaaggtgttgtgtaaatgtttatctgttgacatatacacgagtatttgagcagcaat |
494 |
Q |
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| T |
43107395 |
tcttcattatccaaatcctcatcgaaggtgtcatgtaaatgtttatctgttgacatatacacgagtatttgagcagcaat |
43107474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 293 - 406
Target Start/End: Complemental strand, 38186423 - 38186310
Alignment:
| Q |
293 |
ttgaatatgaattcatcaatttcaccagcttcttccttcttttgttattgtcattcttcaattttgtttcatcaatgtcaccaacaagaccactagtact |
392 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
38186423 |
ttgaacatggattcatcaatttcaccagcttcttccttcttttgttattgtcattcttcaattttgtttcatctatgtcaccaacaagaccacttgtact |
38186324 |
T |
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| Q |
393 |
aggtagaacattct |
406 |
Q |
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|||||||| ||||| |
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| T |
38186323 |
aggtagaatattct |
38186310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 293 - 406
Target Start/End: Original strand, 38211934 - 38212047
Alignment:
| Q |
293 |
ttgaatatgaattcatcaatttcaccagcttcttccttcttttgttattgtcattcttcaattttgtttcatcaatgtcaccaacaagaccactagtact |
392 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
38211934 |
ttgaacatggattcatcaatttcaccagcttcttccttcttttgttattgtcattcttcaattttgtttcatctatgtcaccaacaagaccacttgtact |
38212033 |
T |
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| Q |
393 |
aggtagaacattct |
406 |
Q |
| |
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|||||||| ||||| |
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| T |
38212034 |
aggtagaatattct |
38212047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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