View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15445_low_6 (Length: 410)
Name: NF15445_low_6
Description: NF15445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15445_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 359
Target Start/End: Complemental strand, 23853420 - 23853069
Alignment:
| Q |
8 |
ggacatcatcatagataccaattaactagagttcaattacatagagactcaattgtgtttgaatataaggtgtccccaaatataaataagtgctcaagat |
107 |
Q |
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| T |
23853420 |
ggacatcaacatagataccaattaactagagttcaattacatagagactcaattgtgtttgaatataaggtgtccccaaatataaataagtgctcaagat |
23853321 |
T |
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| Q |
108 |
atgcacggaaatagaacatcaacatgactcgttccaaatataaaaatgaacaaatgaaaggacataataaaatgagatgcctatttaagttgtgttggtt |
207 |
Q |
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| T |
23853320 |
atgcacggaaatagaacatcaacatgactcgttccaaatataaaaatgaacaaatgaaaggacataataaaatgagatgcctatttaagttgtgttggtt |
23853221 |
T |
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| Q |
208 |
gtgtcacggttgtgttgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttca |
307 |
Q |
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| T |
23853220 |
gtgtcacggttgtgttgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttca |
23853121 |
T |
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| Q |
308 |
cttttgagtacatatttcatgttactatgttcctgtggccattcatcatttg |
359 |
Q |
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| T |
23853120 |
cttttgagtacatatttcatgttactatgttcctgtggccattcatcatttg |
23853069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 187 - 359
Target Start/End: Complemental strand, 23752535 - 23752368
Alignment:
| Q |
187 |
cctatttaagttgtgttggttgtgtcacggttgtgttgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagt |
286 |
Q |
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| T |
23752535 |
cctatttaagttgtgttggttgagtccc-----cgttgtgcccacccaacttacagcgttgcttcattcacttccctcaaatatgcatagaaaccaaagt |
23752441 |
T |
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| Q |
287 |
tttgctttttcagttgtttcacttttgagtacatatttcatgttactatgttcctgtggccattcatcatttg |
359 |
Q |
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| T |
23752440 |
tatgcttttgttgttgtttcccttttgagcacatgtttcatgttactatgttctagtagccattcatcatttg |
23752368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 359
Target Start/End: Complemental strand, 22619863 - 22619761
Alignment:
| Q |
257 |
cttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatatttcatgttactatgttcctgtggccattcatcat |
356 |
Q |
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| T |
22619863 |
cttccctcaaatatgcatagaaaccaaagttatgcttttgttgttgtttcccttttgagcacatgtttcatgttactatgttctagtagccattcatcat |
22619764 |
T |
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| Q |
357 |
ttg |
359 |
Q |
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||| |
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| T |
22619763 |
ttg |
22619761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 410
Target Start/End: Original strand, 23853028 - 23853082
Alignment:
| Q |
356 |
tttgatttcaagaagagctttcctctcttgttccatgcaaccaaatgatgaatgg |
410 |
Q |
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| T |
23853028 |
tttgatttcaagaagagctttcctctcttgttccatgcaaccaaatgatgaatgg |
23853082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 356 - 410
Target Start/End: Original strand, 23752327 - 23752381
Alignment:
| Q |
356 |
tttgatttcaagaagagctttcctctcttgttccatgcaaccaaatgatgaatgg |
410 |
Q |
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||||| ||||||||| |||| |||||||||||| ||||||||||||||||||||| |
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| T |
23752327 |
tttgagttcaagaagtgcttgcctctcttgttctatgcaaccaaatgatgaatgg |
23752381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Original strand, 22619732 - 22619774
Alignment:
| Q |
368 |
aagagctttcctctcttgttccatgcaaccaaatgatgaatgg |
410 |
Q |
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| T |
22619732 |
aagagcttgcctctcttgttctaagcaaccaaatgatgaatgg |
22619774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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