View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15445_low_7 (Length: 374)

Name: NF15445_low_7
Description: NF15445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15445_low_7
NF15445_low_7
[»] chr2 (10 HSPs)
chr2 (25-243)||(7724677-7724897)
chr2 (67-367)||(7730419-7730733)
chr2 (281-368)||(7724276-7724367)
chr2 (151-238)||(7717387-7717474)
chr2 (314-368)||(7716498-7716552)
chr2 (17-58)||(7732221-7732262)
chr2 (25-93)||(7717680-7717748)
chr2 (77-130)||(7717496-7717548)
chr2 (16-53)||(32265917-32265954)
chr2 (16-44)||(40058341-40058369)
[»] chr5 (4 HSPs)
chr5 (16-54)||(30655260-30655298)
chr5 (16-53)||(15160366-15160403)
chr5 (17-53)||(4376567-4376603)
chr5 (22-50)||(14416663-14416691)
[»] chr7 (2 HSPs)
chr7 (16-53)||(24731839-24731876)
chr7 (24-53)||(17710579-17710608)
[»] chr3 (2 HSPs)
chr3 (16-53)||(24993328-24993365)
chr3 (17-53)||(9633527-9633563)
[»] chr8 (1 HSPs)
chr8 (17-53)||(6801915-6801951)
[»] chr6 (3 HSPs)
chr6 (22-54)||(6331685-6331717)
chr6 (16-50)||(9236011-9236045)
chr6 (16-53)||(7913486-7913523)
[»] chr4 (1 HSPs)
chr4 (22-54)||(2549238-2549270)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 8e-74; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 25 - 243
Target Start/End: Complemental strand, 7724897 - 7724677
Alignment:
Q  25 tgttactaaatctcatatatgttgtagtgttttacttatgcattttgttattaaaattaatacataagaagggcaccaattcattgaagaagatttggct 124  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7724897 tgttactaaatctcatatatattgtagtgttttacttatgcattttgttattaaaattaacacataagaagggcaccaattcattgaagaagatttggct 7724798  T
Q  125 aagaggatag-nnnnnnnnnnnnnnnnaccataaaggcagttctccccatttttctccca-atatagcatcttcatatgtaagactagattgggccaaat 222  Q
    |||||| |||                 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  7724797 aagaggttagttttttattttctttttaccataaaggcagttctccccatttttctcccatatatagcatcttcatatgtaagattagattgggccaaat 7724698  T
Q  223 caagagcaatataaaacgtta 243  Q
    |||||||||||||||||||||    
T  7724697 caagagcaatataaaacgtta 7724677  T

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Target: chr2; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 67 - 367
Target Start/End: Complemental strand, 7730733 - 7730419
Alignment:
Q  67 ttttgttattaaaattaatacataagaagggcaccaattcattgaagaagatttggctaagaggatagnnnnnnnnnnnnnnnnaccataaa-ggcagtt 165  Q
    |||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |||                |||||||| |||||||    
T  7730733 tttttttattaaaattaacacataagaaaggcacaaattcattgaagaagatttggctaagaggttagttttttatttctttttaccataaaaggcagtt 7730634  T
Q  166 ctccccatttttctccca-atatagcatcttcatatgtaagactagattgggccaaatcaagagcaatataaaacgttagnnnnnnnnnnnnnnnnnccc 264  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||                 |||    
T  7730633 c-ccccatttttctcccatatatagcatcttcatatgtaagactagattgggccaaatcaagagtaatataaaatgttagttttttattttcgttttccc 7730535  T
Q  265 ataaagtcagttgccc-------ttatttattgtttccacaaagtctgttcggtatcattttactcccagagcctctatatccat------aagagtaga 351  Q
    |||||||||||||  |       ||||||||||||||||||||||| |||| | | ||||||||||||| |||||||||||||||      |||||||||    
T  7730534 ataaagtcagttgttccatttttttatttattgtttccacaaagtcagttctgcaacattttactcccatagcctctatatccatatccacaagagtaga 7730435  T
Q  352 taccctttcaatctca 367  Q
    ||||||||||| ||||    
T  7730434 taccctttcaaactca 7730419  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 281 - 368
Target Start/End: Complemental strand, 7724367 - 7724276
Alignment:
Q  281 ttatttattgtttccacaaagtctgttcggtatcattttactcccagagcctctatatccataagagta----gataccctttcaatctcac 368  Q
    ||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  7724367 ttatttattgtttccacaaagtcagttctgcatcattttactcccagagcctctatatccataagagtagatagataccctttcaatctcac 7724276  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 7717474 - 7717387
Alignment:
Q  151 accataaaggcagttctccccatttttctccca-atatagcatcttcatatgtaagactagattgggccaaatcaagagcaatataaaa 238  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||||||||||  |||||||||||||||||||||| |||||||||||    
T  7717474 accataaaggcagttc-ccccacttttctcccatatatagcatcttcatatgtccgactagattgggccaaatcaagggcaatataaaa 7717387  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 314 - 368
Target Start/End: Complemental strand, 7716552 - 7716498
Alignment:
Q  314 cattttactcccagagcctctatatccataagagtagataccctttcaatctcac 368  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||||||||||||    
T  7716552 cattttactcccagggtctctatatccataagagtacataccctttcaatctcac 7716498  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 7732262 - 7732221
Alignment:
Q  17 ttttcaagtgttactaaatctcatatatgttgtagtgtttta 58  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7732262 ttttcaagtgttactaaatctcatatatgttgtagtgtttta 7732221  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 7717748 - 7717680
Alignment:
Q  25 tgttactaaatctcatatatgttgtagtgttttacttatgcattttgttattaaaattaatacataaga 93  Q
    ||||||||||||||||||||||| ||||| || | |||| |||||  ||||||||||||| ||||||||    
T  7717748 tgttactaaatctcatatatgttttagtgattgatttatacatttatttattaaaattaacacataaga 7717680  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 7717548 - 7717496
Alignment:
Q  77 aaaattaatacataagaagggcaccaattcattgaagaagatttggctaagagg 130  Q
    |||||||| |||||||| ||| |  |||||||||||||||||||||||||||||    
T  7717548 aaaattaacacataaga-gggtataaattcattgaagaagatttggctaagagg 7717496  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 32265954 - 32265917
Alignment:
Q  16 attttcaagtgttactaaatctcatatatgttgtagtg 53  Q
    ||||| || |||||||||||||||||||||||||||||    
T  32265954 attttgaactgttactaaatctcatatatgttgtagtg 32265917  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 40058341 - 40058369
Alignment:
Q  16 attttcaagtgttactaaatctcatatat 44  Q
    |||||||||||||||||||||||||||||    
T  40058341 attttcaagtgttactaaatctcatatat 40058369  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 30655260 - 30655298
Alignment:
Q  16 attttcaagtgttactaaatctcatatatgttgtagtgt 54  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  30655260 attttgaagtgttactaaatctcatatatgttgtagtgt 30655298  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 15160403 - 15160366
Alignment:
Q  16 attttcaagtgttactaaatctcatatatgttgtagtg 53  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  15160403 attttgaagtgttactaaatctcatatatgttgtagtg 15160366  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 4376603 - 4376567
Alignment:
Q  17 ttttcaagtgttactaaatctcatatatgttgtagtg 53  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  4376603 ttttcaagtgttacaaaatctcatatatgtagtagtg 4376567  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 14416691 - 14416663
Alignment:
Q  22 aagtgttactaaatctcatatatgttgta 50  Q
    |||||||||||||||||||||||||||||    
T  14416691 aagtgttactaaatctcatatatgttgta 14416663  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 24731839 - 24731876
Alignment:
Q  16 attttcaagtgttactaaatctcatatatgttgtagtg 53  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  24731839 attttgaagtgttactaaatctcatatatgttgtagtg 24731876  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 17710608 - 17710579
Alignment:
Q  24 gtgttactaaatctcatatatgttgtagtg 53  Q
    ||||||||||||||||||||||||||||||    
T  17710608 gtgttactaaatctcatatatgttgtagtg 17710579  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 24993365 - 24993328
Alignment:
Q  16 attttcaagtgttactaaatctcatatatgttgtagtg 53  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  24993365 attttgaagtgttactaaatctcatatatgttgtagtg 24993328  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 9633527 - 9633563
Alignment:
Q  17 ttttcaagtgttactaaatctcatatatgttgtagtg 53  Q
    |||||||||||||||||||||||  ||||||||||||    
T  9633527 ttttcaagtgttactaaatctcaattatgttgtagtg 9633563  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 6801915 - 6801951
Alignment:
Q  17 ttttcaagtgttactaaatctcatatatgttgtagtg 53  Q
    |||||||||||||||||||||||| ||||||||||||    
T  6801915 ttttcaagtgttactaaatctcatctatgttgtagtg 6801951  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 6331685 - 6331717
Alignment:
Q  22 aagtgttactaaatctcatatatgttgtagtgt 54  Q
    |||||||||||||||||||||||||||||||||    
T  6331685 aagtgttactaaatctcatatatgttgtagtgt 6331717  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 9236045 - 9236011
Alignment:
Q  16 attttcaagtgttactaaatctcatatatgttgta 50  Q
    ||||| |||||||||||||||||||||||||||||    
T  9236045 attttgaagtgttactaaatctcatatatgttgta 9236011  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 7913486 - 7913523
Alignment:
Q  16 attttcaagtgttactaaatctcatatatgttgtagtg 53  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  7913486 attttgaagtgttactaaatctcatacatgttgtagtg 7913523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 2549270 - 2549238
Alignment:
Q  22 aagtgttactaaatctcatatatgttgtagtgt 54  Q
    |||||||||||||||||||||||||||||||||    
T  2549270 aagtgttactaaatctcatatatgttgtagtgt 2549238  T

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