View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15445_low_8 (Length: 357)
Name: NF15445_low_8
Description: NF15445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15445_low_8 |
 | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 26354417 - 26354069
Alignment:
| Q |
1 |
aatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaactattgtagacttatatttgatacaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26354417 |
aatttggaatggatcaagatgttccaagttatgtgcctagatttaatgagactaaattcattgcttggaaaaactattgtaggcttatatttgatacaga |
26354318 |
T |
|
| Q |
101 |
tttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26354317 |
tttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaac |
26354218 |
T |
|
| Q |
201 |
attgtgaagcggaagagaagtgaaagctcaaggaaacacagagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26354217 |
attgtgaagcggaagagaagtgaaagctcaaggaaacacagagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttc |
26354118 |
T |
|
| Q |
301 |
ctcccaatcttgttgacattcttaattatcaaaatttttgtgatgatgt |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26354117 |
ctcccaatcttgttgacattcttaattatcaaaatttttgtgatgatgt |
26354069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 9815662 - 9815987
Alignment:
| Q |
1 |
aatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaactattgtagacttatatttgatacaga |
100 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||||||||||||||||| ||||||| |||| | | |
|
|
| T |
9815662 |
aatttgaaatggatcaagatgttccaacttatgtgcctagattcaatgagactaaactcatggcttggaaaaactattgtaggcttatatctgatcaaaa |
9815761 |
T |
|
| Q |
101 |
tttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaac |
200 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||| |||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||| | ||| |
|
|
| T |
9815762 |
tttgtattttccaccaagactttttgaggcagatgttaccacacgatatacaatgtggtggaagcaatcggtattgggtcatgtcgattttgttcagaac |
9815861 |
T |
|
| Q |
201 |
attgtgaagcggaagagaagtgaaagctcaaggaaacacagagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttc |
300 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| ||||| ||||||| ||||||| | |||||||| ||||||||||||| ||||||||| ||||| |
|
|
| T |
9815862 |
attgtgaagcggaagagaagtcaaagttcaaggaagtacagatctcatgtaggaaaaattgacagaagttgtaatgatgttggttttccacctgaatttc |
9815961 |
T |
|
| Q |
301 |
ctcccaatcttgttgacattcttaat |
326 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
9815962 |
ctcccaatcttgttgaccttcttaat |
9815987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 38435079 - 38434911
Alignment:
| Q |
1 |
aatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaactattgtagacttatatttgatacaga |
100 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||| ||| || |||||||||| || ||||||| ||||||||| | || || |||||||||| | | |
|
|
| T |
38435079 |
aatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaactaccgcagtctcatatttgataaaaa |
38434980 |
T |
|
| Q |
101 |
tttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatc |
169 |
Q |
| |
|
||||||||| ||||||||| | | |||||||||||| |||| |||||||||| |||||||| |||||| |
|
|
| T |
38434979 |
tttgtattttccaccaagattatttgaggcagatgttaccaagcgttatgcaaggtggtggaagcaatc |
38434911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 20015691 - 20015344
Alignment:
| Q |
1 |
aatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaactattgtagacttatatttgatacaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||||| | ||| |||||||||| | |||||||| ||||||| ||||| | | |
|
|
| T |
20015691 |
aatttggaatggatcaagatgttccaggtgatgtgcctagattcaatgagactaaaatcactgcttggaaatattattgtaggcttatatctgataaaaa |
20015592 |
T |
|
| Q |
101 |
tttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaac |
200 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| ||||||||||| ||| |
|
|
| T |
20015591 |
cttgtattttccaccaagactctttgaggcagatgtagccacacgttatgcaatgtggtggaagcaatcggtattgggtcacagagattttgttaagaac |
20015492 |
T |
|
| Q |
201 |
attgtgaagcggaagagaagtgaaagctcaaggaaacacagagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||| ||||| | ||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
20015491 |
attgtgaagcggaagagaagtgaaagttcaaggaaacatagacctcatctaggaaaaactaacagaagcagtaatgatgttggtgttccacctggatttt |
20015392 |
T |
|
| Q |
301 |
ctcccaatcttgttgacattcttaattatcaaaatttttgtgatgatg |
348 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||| ||||| ||||||| |
|
|
| T |
20015391 |
gtcccaatcttgttgaccttcttaagtatggaaaattttgcgatgatg |
20015344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 20007744 - 20007447
Alignment:
| Q |
19 |
atgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaag |
118 |
Q |
| |
|
||||||||| | |||||||||| ||||||||||||| ||||||||||||||| ||||||| ||| ||||||| ||||| | |||||||||| |||||||| |
|
|
| T |
20007744 |
atgttccaactaatgtgcctaggttcaatgagactaaattcattgcttggaagaactattttaggcttatatctgataaaaatttgtattttccaccaag |
20007645 |
T |
|
| Q |
119 |
actttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaacattgtgaagcggaagaga |
218 |
Q |
| |
|
| || |||||||| |||| |||||| ||||||| |||||||| |||| |||||||||||| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
20007644 |
atattttgaggcagctgtacgcacacgatatgcaaagtggtggaagcaagtggtattgggtcatggcgattttgttaagaacgttgtgaagcggaagaga |
20007545 |
T |
|
| Q |
219 |
agtgaaagctcaaggaaacacagagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttcctcccaatcttgttga |
316 |
Q |
| |
|
|||| || ||||||| ||| ||| ||||||| ||| || ||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20007544 |
agtgcaatttcaaggagacatagatctcatgtaggacaatctaacagaagttggattgatgttggtgttccacctggatttcctcccaatcttgttga |
20007447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 26647632 - 26647955
Alignment:
| Q |
1 |
aatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaactattgtagacttatatttgatacaga |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| | |||||||||||||||||| ||||||| |||| ||||| |
|
|
| T |
26647632 |
aatttggaatggatcaagatgttccgagtgatgtgcctcgattcaatgagactaaagacattgcttggaaaaactactgtagacgcatatctgataggag |
26647731 |
T |
|
| Q |
101 |
tttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaac |
200 |
Q |
| |
|
||||||||||||| | ||| ||| |||||||||||| || || |||||||||| |||||||| |||||| ||||||||| || |||||||||| || |
|
|
| T |
26647732 |
tttgtatttcccatcgagattttttgaggcagatgttactacccgttatgcaaggtggtggaaacaatcagtattgggtcgtgatgattttgttatgaaa |
26647831 |
T |
|
| Q |
201 |
attgtgaagcggaagagaagtgaaagctcaaggaaacacagagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttc |
300 |
Q |
| |
|
|||||| || ||| |||||| ||| ||||||||||| |||| | ||| |||||| ||||| |||| |||||||||||||||||| ||||| |||| |
|
|
| T |
26647832 |
attgtgcagaagaaacgaagtgcaagttcaaggaaacatagagtttgtgtaggaaaagataacataagtggtaatgatgttggtgttccccctggttttc |
26647931 |
T |
|
| Q |
301 |
ctcccaatcttgttgacattctta |
324 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
26647932 |
ctcccaatcttgttgacactctta |
26647955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 26653776 - 26654124
Alignment:
| Q |
1 |
aatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaactattgtagacttatatttgatacaga |
100 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||| |||| ||||||||||||| || |||||||||| ||||||| || || | ||| | | ||| | | |
|
|
| T |
26653776 |
aatttggaattgaccaagatgttccaagttatgtggctaggttcaatgagactaaatacattgcttgggaaaactactgcaggcctatttcttataaaaa |
26653875 |
T |
|
| Q |
101 |
tttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaac |
200 |
Q |
| |
|
||||||||| |||||||| | | |||||||||||| | || |||||||||| |||||||| |||| |||||||||||| ||||||||||| ||| |
|
|
| T |
26653876 |
tttgtattttccaccaaggttgtttgaggcagatgtcatcatgcgttatgcaaagtggtggaagcaactggtattgggtcatggagattttgttaagaac |
26653975 |
T |
|
| Q |
201 |
attgtgaagcggaagagaagtgaaagctcaaggaaacacagagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttc |
300 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||||| ||||||||||| || ||| ||| || |||| | ||| || |||||||||||||||||| |
|
|
| T |
26653976 |
attgtgaaacggaagagaagtgtgagttcaaggaaacctagagctcatgtagggaaagctagcaaaagtggtgtcgattttagtgttccacctggatttc |
26654075 |
T |
|
| Q |
301 |
ctcccaatcttgttgacattcttaattatcaaaatttttgtgatgatgt |
349 |
Q |
| |
|
|||||||||||||||||| || || |||| ||| ||||||| |||||| |
|
|
| T |
26654076 |
ctcccaatcttgttgacactcatatttatggaaaattttgtgctgatgt |
26654124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 19956712 - 19957059
Alignment:
| Q |
1 |
aatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaactattgtagacttatatttgatacaga |
100 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| |||| ||||||||||||| || |||||||||||||||||| || |||| |||| ||||| | | |
|
|
| T |
19956712 |
aatttggaattgatcaagatgttccgggttatgtagctaggttcaatgagactaaatacattgcttggaaaaactactgcagacccatatatgataaaaa |
19956811 |
T |
|
| Q |
101 |
tttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaac |
200 |
Q |
| |
|
|||||||| ||||||||| | | |||||||||||| |||||||||||||||| ||||||| ||||||| |||| ||| | | |||||| || || |
|
|
| T |
19956812 |
cttgtattttccaccaagattatttgaggcagatgttaccacacgttatgcaaggtggtgggtgcaatcagtatttcctcacgacaattttgggaagaaa |
19956911 |
T |
|
| Q |
201 |
attgtgaagcggaagagaagtgaaagctcaaggaaacacagagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttc |
300 |
Q |
| |
|
|||||| |||||||||||| ||| |||||||| | ||| |||| || ||||| |||||||||| || || ||| |||||| |||||||||| |
|
|
| T |
19956912 |
attgtgcgtcggaagagaagttcaagttcaaggaagcgtagacctcacgtaggaaagtttaacagaagtggtatggaggtttgtgttcaacctggatttt |
19957011 |
T |
|
| Q |
301 |
ctcccaatcttgttgacattcttaattatcaaaatttttgtgatgatg |
348 |
Q |
| |
|
|||||||||||||||| | ||||| || | ||||| |||||||||||| |
|
|
| T |
19957012 |
ctcccaatcttgttgatactcttacttttgaaaatgtttgtgatgatg |
19957059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 19839021 - 19839336
Alignment:
| Q |
1 |
aatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaactattgtagacttatatttgatacaga |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| |||| ||||||| ||||| || ||||||||||||||||||||| |||| |||| ||||| | | |
|
|
| T |
19839021 |
aattcggaatggatcaagatgttccaggttatgtggctaggttcaatgtgactaaatacattgcttggaaaaactattgcagacccatatatgataaaaa |
19839120 |
T |
|
| Q |
101 |
tttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaac |
200 |
Q |
| |
|
|||||||| ||||||||| | | |||||||||||| |||| ||||||||||| |||||||| |||||| |||| ||| | |||||||| || || |
|
|
| T |
19839121 |
cttgtattttccaccaagattatttgaggcagatgttaccatacgttatgcaaggtggtggatacaatcagtatttcctcacgacgattttgagaagaat |
19839220 |
T |
|
| Q |
201 |
attgtgaagcggaagagaagtgaaagctcaaggaaacacagagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttc |
300 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||| | ||| ||||||| ||||| ||||| |||| || ||| ||| |||||| |||||||||| |
|
|
| T |
19839221 |
attgtgcgttggaagagaagttcaagttcaaggaagcgtagacctcatgtaggaaagtttaacataagtggtattgaggtttgtgttcaacctggatttt |
19839320 |
T |
|
| Q |
301 |
ctcccaatcttgttga |
316 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
19839321 |
ctcccaatctggttga |
19839336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 20033824 - 20033501
Alignment:
| Q |
1 |
aatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaactattgtagacttatatttgatacaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | | |||||||| |||||| ||| | | || | |||| | | |
|
|
| T |
20033824 |
aatttggaatggatcaagatgttccaagttatgtgcctaggttcaacgagactaaagagaatgcttggagaaactactgtcggcccatctctgatgaaaa |
20033725 |
T |
|
| Q |
101 |
tttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaac |
200 |
Q |
| |
|
||||||||| ||||||||| | | |||||||||||| ||||| |||||||||| ||||||| ||||||| || |||| || | ||||||| || || |
|
|
| T |
20033724 |
tttgtattttccaccaagattatttgaggcagatgttaccacgcgttatgcaaactggtggaagcaatcagtagtgggctgtgacaattttgtgaagaat |
20033625 |
T |
|
| Q |
201 |
attgtgaagcggaagagaagtgaaagctcaaggaaacacagagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttc |
300 |
Q |
| |
|
||| || || |||||||||| ||| ||||| ||| ||| ||| | | ||||| ||||| ||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
20033624 |
attatgcggcataagagaagtgcaagttcaagaaaatgtagacctcgtataggaaatgctaacgaaagtagtaatgatgatggtgttgcacctggatttc |
20033525 |
T |
|
| Q |
301 |
ctcccaatcttgttgacattctta |
324 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
20033524 |
ctcccaatcttgttgacactctta |
20033501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 19812911 - 19813226
Alignment:
| Q |
1 |
aatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaactattgtagacttatatttgatacaga |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||| | |||| | | ||||| ||||||||||| || || || |||| ||||| | | |
|
|
| T |
19812911 |
aatttggaattgatcaagatgttccaagttatgtgcctaggttcaataaaactaaagtgattgcatggaaaaactactgcaggctcatatctgataaaaa |
19813010 |
T |
|
| Q |
101 |
tttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaac |
200 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| ||||| | ||||| | |||||||| ||||| | || || | | |||||||||||| || |
|
|
| T |
19813011 |
attgtattttccaccaagactttttgaggcagatgttaccacgcattatgtcaagtggtggaagcaatttgttttaggacgcgacgattttgttaacaat |
19813110 |
T |
|
| Q |
201 |
attgtgaagcggaagagaagtgaaagctcaaggaaacacagagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttc |
300 |
Q |
| |
|
|||||| ||||| |||||| || ||||| |||||| || | ||||| |||||| | |||||||| || || || || ||||||||||| ||||| |
|
|
| T |
19813111 |
attgtgcgtcggaaaagaagttccagttcaagaaaacaccgaccacatgtaggaaaatttgacagaagtggtattggtgctgctgttccacctgaatttc |
19813210 |
T |
|
| Q |
301 |
ctcccaatcttgttga |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
19813211 |
ctcccaatcttgttga |
19813226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 162
Target Start/End: Original strand, 19819190 - 19819349
Alignment:
| Q |
3 |
tttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaactattgtagacttatatttgatacagatt |
102 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||| ||||||||||||| || |||||||||||||||||| || || | |||| ||||| | | | |
|
|
| T |
19819190 |
tttggaattgatcaagatgttcctggttatgtggctaggttcaatgagactaaatacattgcttggaaaaactactgcaggccaatatctgataaaaact |
19819289 |
T |
|
| Q |
103 |
tgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtgga |
162 |
Q |
| |
|
||||||| ||||||||| | | |||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
19819290 |
tgtattttccaccaagattatttgaggcagatgttaccacacgttatgcaaggtggtgga |
19819349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 19832501 - 19832664
Alignment:
| Q |
4 |
ttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaactattgtagacttatatttgatacagattt |
103 |
Q |
| |
|
||||||| |||||||||||||| |||||||| |||| ||||||||||||| || |||||||||||||||||| || || | |||| ||||| | | || |
|
|
| T |
19832501 |
ttggaattgatcaagatgttcctggttatgtggctaggttcaatgagactaaatacattgcttggaaaaactactgcaggccaatatctgataaaaactt |
19832600 |
T |
|
| Q |
104 |
gtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaa |
167 |
Q |
| |
|
|||||| ||||||||| | | |||||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
19832601 |
gtattttccaccaagattatttgaggcagatgttaccacacgttatgcaaggtggtggaagcaa |
19832664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 19951752 - 19952059
Alignment:
| Q |
1 |
aatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaactattgtagacttatatttgatacaga |
100 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||| |||||| | |||| | | ||||||||||||||||| || || | |||| ||||| | | |
|
|
| T |
19951752 |
aatttgcaatggatcaagatgttccgagttatgtgcctaggttcaataaaactaaagtgattgcttggaaaaactactgcaggcccatatctgataaaaa |
19951851 |
T |
|
| Q |
101 |
tttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaac |
200 |
Q |
| |
|
||||||||| ||| ||| | ||| |||||| |||| | || |||||||||| ||||||| ||||||| |||||| | |||||||||| || |
|
|
| T |
19951852 |
tttgtattttccatcaaaaatttttgaggctgatgctagcatgcgttatgcaaagtggtgggagcaatcagtattggattgcagaaattttgttaagaat |
19951951 |
T |
|
| Q |
201 |
attgtgaagcggaagagaagtgaaagctcaaggaaacacagagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttc |
300 |
Q |
| |
|
|||||| ||| ||| |||| | ||| |||| ||| | ||| ||||||| |||||| |||||| |||| ||||| ||||||||||||||||||||||| |
|
|
| T |
19951952 |
attgtgcagcagaaaagaactccaagtccaagaaaagatagacctcatgtaggaaaagctaacataagtggtaatgttgttggtgttccacctggatttc |
19952051 |
T |
|
| Q |
301 |
ctcccaat |
308 |
Q |
| |
|
|| ||||| |
|
|
| T |
19952052 |
ctaccaat |
19952059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 20036093 - 20035746
Alignment:
| Q |
1 |
aatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaactattgtagacttatatttgatacaga |
100 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||| |||| | |||| | |||| | | |||||||||| |||||| || || || |||| ||||| | | |
|
|
| T |
20036093 |
aatttggaattgatcaagatgttccgagttacgtggctaggtgcaataaaactaaagtgattgcttggagaaactactgcaggctcatatctgataaaaa |
20035994 |
T |
|
| Q |
101 |
tttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaac |
200 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| |||||| |||||| | || ||||| ||||| |||| ||||| | || ||||||||| || |
|
|
| T |
20035993 |
attgtattttccaccaagactttttgaggcagatgttaccacatgttatgtcaagtagtggaagcaatttgtattaggtcacgacgtttttgttaacaat |
20035894 |
T |
|
| Q |
201 |
attgtgaagcggaagagaagtgaaagctcaaggaaacacagagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttc |
300 |
Q |
| |
|
|||||| ||||| |||||| || ||||| |||||||| | ||||| |||||| |||| |||| || ||| ||| |||||| ||||||||| |
|
|
| T |
20035893 |
attgtgcgtcggaaaagaagttccagttcaagacaacacagaccacatgtaggaaaattaaacaaaagtggtattgaagtttgtgttcagcctggatttt |
20035794 |
T |
|
| Q |
301 |
ctcccaatcttgttgacattcttaattatcaaaatttttgtgatgatg |
348 |
Q |
| |
|
|||||||||||||||| | ||||| || | |||| |||||||||||| |
|
|
| T |
20035793 |
ctcccaatcttgttgatactcttatttttggaaatgtttgtgatgatg |
20035746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 19849624 - 19849925
Alignment:
| Q |
1 |
aatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaactattgtagacttatatttgatacaga |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || || ||||| |||| | |||||||||| |||||||||| |||| | ||||| | |
|
|
| T |
19849624 |
aattcggaatggatcaagatgttccaagttatgtgccgaggttaaatgatactaaagacattgcttggcaaaactattgcagacccgtccatgataaacg |
19849723 |
T |
|
| Q |
101 |
tttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaac |
200 |
Q |
| |
|
||||||||| ||||| || |||| ||||| ||||| ||| ||||||||||| |||||||| ||| || |||||||| ||||||||||| || |
|
|
| T |
19849724 |
tttgtattttccaccgaggcttttcgaggctgatgttaccgtacgttatgcaaagtggtggaagcactcggtattgggttgcaatgattttgttaagaaa |
19849823 |
T |
|
| Q |
201 |
attgtgaagcggaagagaagtgaaagctcaaggaaacacagagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttc |
300 |
Q |
| |
|
||||| || |||||||||| ||| ||||| ||||| ||| | ||| |||||| ||||||||||| ||||||||||||| |||||| |||||||| |
|
|
| T |
19849824 |
gttgtgcgtcgaaagagaagtgcaagttcaagaaaacaaagacattgtgtaggaaaagctaacagaagtggtaatgatgttggttttccacttggatttc |
19849923 |
T |
|
| Q |
301 |
ct |
302 |
Q |
| |
|
|| |
|
|
| T |
19849924 |
ct |
19849925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 19990153 - 19990205
Alignment:
| Q |
1 |
aatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagact |
53 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||| |||||||||||| |
|
|
| T |
19990153 |
aatttggaatggatcaagatattccaagttacgtgcctaggttcaatgagact |
19990205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 20046847 - 20046969
Alignment:
| Q |
100 |
atttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaa |
199 |
Q |
| |
|
|||||||||| ||||||||| | | |||||||||||| |||| ||||||| || |||||||| |||||| | ||||||| || ||||| ||| | || |
|
|
| T |
20046847 |
atttgtattttccaccaagattgtttgaggcagatgttaccatgcgttatgtaaagtggtggaagcaatcggtgttgggtcgtggagatttcgttgagaa |
20046946 |
T |
|
| Q |
200 |
cattgtgaagcggaagagaagtg |
222 |
Q |
| |
|
|||||||| ||||| ||||||| |
|
|
| T |
20046947 |
aattgtgaatcggaatagaagtg |
20046969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 20006470 - 20006421
Alignment:
| Q |
275 |
tgatgttggtgttccacctggatttcctcccaatcttgttgacattctta |
324 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
20006470 |
tgatgttggtgttccagatggatttcctcccaatcttgttggcactctta |
20006421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 24839453 - 24839392
Alignment:
| Q |
12 |
gatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaa |
73 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||||||||| | ||||||||||||||| |
|
|
| T |
24839453 |
gatcaagatgttcctggttatgtgtctagactcaatgagactaaagccattgcttggaaaaa |
24839392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 19858711 - 19858772
Alignment:
| Q |
12 |
gatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaa |
73 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| || | |||||||||||||||| |
|
|
| T |
19858711 |
gatcaagatgttcctggttatgtgtctagattcaatgaatctcaagtcattgcttggaaaaa |
19858772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 19854128 - 19854200
Alignment:
| Q |
1 |
aatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaa |
73 |
Q |
| |
|
|||||||| | |||||||||||||| |||||||| | ||| ||||||||||| | ||||||| |||||||| |
|
|
| T |
19854128 |
aatttggatttgatcaagatgttcctggttatgtgtccagactcaatgagactcaagtcattgcatggaaaaa |
19854200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 1717848 - 1718171
Alignment:
| Q |
1 |
aatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaactattgtagacttatatttgatacaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||| || ||||||||||||| |||| || || | |||| ||||| | | |
|
|
| T |
1717848 |
aatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgataaaaa |
1717947 |
T |
|
| Q |
101 |
tttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaac |
200 |
Q |
| |
|
||||||| ||| | ||| ||| ||||| | |||| ||| |||||||||||| |||||||| ||||| ||| || |||||||||||| || |
|
|
| T |
1717948 |
aatgtattttccatcgagattttttgagggaaatgttacctcacgttatgcaaggtggtggaagcaattggtatctggcagcaacgattttgttaagaaa |
1718047 |
T |
|
| Q |
201 |
attgtgaagcggaagagaagtgaaagctcaaggaaacacagagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttc |
300 |
Q |
| |
|
| |||| ||| ||||||| ||| | | |||| ||||| |||||| |||| |||||| |||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
1718048 |
agtgtgcagcagaagagatgtgcatgttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttc |
1718147 |
T |
|
| Q |
301 |
ctcccaatcttgttgacattctta |
324 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
1718148 |
ctcccaatcttgttgacactctta |
1718171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 38483710 - 38483819
Alignment:
| Q |
102 |
ttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaaca |
201 |
Q |
| |
|
|||||| | ||||| | ||||| |||||||||||||||||||||||||||||||||||||| || ||| ||||||| |||||||||||| |||| |
|
|
| T |
38483710 |
ttgtatattccaccgatactttttgaggcagatgtaaccacacgttatgcaatgtggtggaaaca------attaggtcatggcgattttgttaagaaca |
38483803 |
T |
|
| Q |
202 |
ttgtgaagcggaagag |
217 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
38483804 |
ttgtgaagtggaagag |
38483819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 349
Target Start/End: Original strand, 38483820 - 38483897
Alignment:
| Q |
272 |
taatgatgttggtgttccacctggatttcctcccaatcttgttgacattcttaattatcaaaatttttgtgatgatgt |
349 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||| ||| ||||| | ||| || ||||||||||| |
|
|
| T |
38483820 |
taatgatgttggtgttccacctgaatttcctccagatcttgttgaccttcctaattttttaaaattctgtgatgatgt |
38483897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 22655806 - 22655640
Alignment:
| Q |
1 |
aatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaactattgtagacttatatttgatacaga |
100 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| |||| ||||||||||||| || |||||||||||||||||| || |||| |||| ||||| | | |
|
|
| T |
22655806 |
aatttggaattgatcaagatgttccgggttatgtagctaggttcaatgagactaaatacattgcttggaaaaactactgcagacccatatctgataaaaa |
22655707 |
T |
|
| Q |
101 |
tttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaa |
167 |
Q |
| |
|
|||||||| ||||||||| | | |||| |||||| ||||||| |||||||| |||||||| |||| |
|
|
| T |
22655706 |
cttgtattttccaccaagattatttgagatagatgttaccacacattatgcaaggtggtggaagcaa |
22655640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 11544698 - 11544770
Alignment:
| Q |
1 |
aatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaa |
73 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||| | | ||||||||||||||| |
|
|
| T |
11544698 |
aatttggaatggatcaagatgttccagcttgtgtgcctagattcaatgagaatgaaaccattgcttggaaaaa |
11544770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 327
Target Start/End: Complemental strand, 22685572 - 22685504
Alignment:
| Q |
259 |
ctaacagaagtattaatgatgttggtgttccacctggatttcctcccaatcttgttgacattcttaatt |
327 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| || |||||||||| ||| ||||||| |
|
|
| T |
22685572 |
ctaacagaagtggtaatgatgttggtgttccacctggattttctttcaatcttgttaacacacttaatt |
22685504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 11563907 - 11563841
Alignment:
| Q |
7 |
gaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaa |
73 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||| | | ||||||||||||||| |
|
|
| T |
11563907 |
gaatggatcaagatgttccagcttgtgtgcctagattcaatgagaatgaaaccattgcttggaaaaa |
11563841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 236
Target Start/End: Complemental strand, 12495422 - 12495246
Alignment:
| Q |
60 |
attgcttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggt |
159 |
Q |
| |
|
||||||| ||||||||||| ||| || || | | ||| | |||||||||| ||||| |||| | |||||||||| | |||| ||||||| || || || |
|
|
| T |
12495422 |
attgcttcgaaaaactattctaggctcatgtctaataaaaatttgtattttgcaccatgactgtttgaggcagatattaccatgcgttatgtaaagttgt |
12495323 |
T |
|
| Q |
160 |
ggaggcaatcaatattgggtcatgtcgattttgttaaaaacattgtgaagcggaagagaagtgaaagctcaaggaaa |
236 |
Q |
| |
|
||| |||||| || |||||||||| ||||||||||| || |||||||||| |||||||||| |||||||||||| |
|
|
| T |
12495322 |
ggaagcaatcgatgttgggtcatggagattttgttaagaagattgtgaagcagaagagaagtttgagctcaaggaaa |
12495246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 236
Target Start/End: Complemental strand, 12519226 - 12519050
Alignment:
| Q |
60 |
attgcttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggt |
159 |
Q |
| |
|
||||||| ||||||||||| ||| || || | | ||| | |||||||||| ||||| |||| | ||||||||| | |||| ||||||| || ||||| |
|
|
| T |
12519226 |
attgcttcgaaaaactattctaggctcatgtctaataaaaatttgtattttgcaccatgactgtttgaggcagaaattaccatgcgttatgtaaagtggt |
12519127 |
T |
|
| Q |
160 |
ggaggcaatcaatattgggtcatgtcgattttgttaaaaacattgtgaagcggaagagaagtgaaagctcaaggaaa |
236 |
Q |
| |
|
||| |||||| || |||||||||| ||||||||||| || |||||||||| |||||||||| |||||||||||| |
|
|
| T |
12519126 |
ggaagcaatcgatgttgggtcatggagattttgttaagaagattgtgaagcagaagagaagtttgagctcaaggaaa |
12519050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 100 - 236
Target Start/End: Complemental strand, 12579479 - 12579343
Alignment:
| Q |
100 |
atttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaa |
199 |
Q |
| |
|
|||||||||| ||||| |||| | |||||||||| | |||| ||||||| || |||||||| ||||||||| |||||||||| ||||| ||||| || |
|
|
| T |
12579479 |
atttgtattttgcaccatgactgtttgaggcagatattaccatgcgttatgtaaagtggtggaagcaatcaatgttgggtcatgaagatttcgttaagaa |
12579380 |
T |
|
| Q |
200 |
cattgtgaagcggaagagaagtgaaagctcaaggaaa |
236 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| |
|
|
| T |
12579379 |
gattgtgaagcagaagagaagtttgagctcaaggaaa |
12579343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 6397208 - 6397050
Alignment:
| Q |
64 |
cttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggag |
163 |
Q |
| |
|
||||||||||||| | ||| | ||| | ||||| | |||||||||| ||||||||||| | |||||| ||||| || | | |||||||| ||||| || |
|
|
| T |
6397208 |
cttggaaaaactactctaggcctatgtctgataaaaatttgtattttccaccaagactgtttgaggctgatgttactatgcattatgcaaagtggtagaa |
6397109 |
T |
|
| Q |
164 |
gcaatcaatattgggtcatgtcgattttgttaaaaacattgtgaagcggaagagaagtg |
222 |
Q |
| |
|
|||||| | || ||||||| ||||||||||| || |||||||||||||||||||||| |
|
|
| T |
6397108 |
gcaatcggtgttaggtcatggagattttgttaagaagattgtgaagcggaagagaagtg |
6397050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 39191466 - 39191394
Alignment:
| Q |
1 |
aatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaa |
73 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
39191466 |
aatttggaatggatcaagatgttccagattgtgtgcctagattcaatgagactgaaaccattgcttggaaaaa |
39191394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 19601 - 19562
Alignment:
| Q |
276 |
gatgttggtgttccacctggatttcctcccaatcttgttg |
315 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
19601 |
gatgttggtgttctacctggatttcctcccattcttgttg |
19562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 28219103 - 28219064
Alignment:
| Q |
276 |
gatgttggtgttccacctggatttcctcccaatcttgttg |
315 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
28219103 |
gatgttggtgttctacctggatttcctcccattcttgttg |
28219064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University