View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15446_high_10 (Length: 337)
Name: NF15446_high_10
Description: NF15446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15446_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 4131141 - 4131447
Alignment:
| Q |
11 |
ccaagaatattgagggtgcgagaaggtggacctcacatttattctaaataccaacatcaacccttttatacaatcatacaatgtttgtgattattatctg |
110 |
Q |
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| T |
4131141 |
ccaaaaatattgagggtgcgagaaggtggacctcacatttattctaaataccaacatcaacccttttatacaatcatacaatgtttgtgattattatctg |
4131240 |
T |
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| Q |
111 |
ttatgatttctttcttatttgtatatttcccgcataatgaaatacaactttatatgttcnnnnnnnatgtcttcgaaaccatgcaaatttaacaattcta |
210 |
Q |
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| T |
4131241 |
tt-tgatttctttcttatttgtatatttcctgcataatgaaatacaactttatatgttcttttttt-tgtcttcgaaaccatgcaaatttaacaattcta |
4131338 |
T |
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| Q |
211 |
tctatggatgctaatcaaaattgagtaatggtcattaatnnnnnnnnttattctacaaacgaccataccacacactctgaaccaaattgcatgagtaata |
310 |
Q |
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| T |
4131339 |
tctatggatgctaatcaaaattgagtaatggtcattaataaaaaaaattattctacaaacaaccataccacacactctgaaccaaattgcatgagtaata |
4131438 |
T |
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| Q |
311 |
caagatagt |
319 |
Q |
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| T |
4131439 |
caagatagt |
4131447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 4107966 - 4108050
Alignment:
| Q |
26 |
gtgcgagaaggtggacctcacatttattctaaataccaacatcaacccttttatacaatcatacaatgtttgtgattattatctg |
110 |
Q |
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| T |
4107966 |
gtgcgagaaggttgatctcatatttgttctaaataccaacatcgacacttttatacaatcatacaatgtttatgattattatctg |
4108050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 317
Target Start/End: Original strand, 4108160 - 4108220
Alignment:
| Q |
258 |
ttattctacaaacgaccataccaca-cactctgaaccaaattgcatgagtaatacaagata |
317 |
Q |
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| T |
4108160 |
ttattctacaaacagccataccacaaccctctcaaccaaattgcatgagtaatacaagata |
4108220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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