View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15446_high_18 (Length: 241)

Name: NF15446_high_18
Description: NF15446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15446_high_18
NF15446_high_18
[»] chr2 (5 HSPs)
chr2 (143-239)||(6314491-6314587)
chr2 (42-133)||(6314613-6314704)
chr2 (143-224)||(32854573-32854655)
chr2 (144-213)||(17777111-17777180)
chr2 (143-191)||(11265065-11265113)
[»] chr8 (3 HSPs)
chr8 (143-213)||(40904584-40904654)
chr8 (143-213)||(5328514-5328584)
chr8 (149-213)||(31024347-31024411)
[»] chr3 (8 HSPs)
chr3 (153-211)||(44364076-44364133)
chr3 (149-213)||(44625178-44625242)
chr3 (143-213)||(25883935-25884005)
chr3 (149-213)||(15085637-15085701)
chr3 (149-213)||(27329885-27329949)
chr3 (149-213)||(41253702-41253766)
chr3 (149-213)||(41710636-41710700)
chr3 (149-213)||(51879148-51879212)
[»] chr7 (2 HSPs)
chr7 (143-212)||(18503427-18503496)
chr7 (143-213)||(32047142-32047212)
[»] chr5 (2 HSPs)
chr5 (149-213)||(8241103-8241167)
chr5 (149-213)||(3741007-3741071)
[»] chr4 (2 HSPs)
chr4 (149-213)||(30305852-30305916)
chr4 (149-213)||(36099136-36099200)
[»] chr1 (2 HSPs)
chr1 (144-213)||(47930619-47930688)
chr1 (163-191)||(24983511-24983539)
[»] scaffold0010 (1 HSPs)
scaffold0010 (149-213)||(236311-236374)


Alignment Details
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 6314587 - 6314491
Alignment:
Q  143 gtcaaatagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaacccggcccttgcatccacggggacgttga 239  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6314587 gtcaaatagcctagtggttcaaactcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaacccggcccctgcatccacggggacgttga 6314491  T

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Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 6314704 - 6314613
Alignment:
Q  42 aacattagcacggtcaatgttgagaaaaccggaaccgtgatcgtaccgatgagattttaagtttatgatttacttgtttcaatcatggttga 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6314704 aacattagcacggtcaatgttgagaaaaccggaaccgtgatcgtaccgatgagattttaagtttatggtttacttgtttcaatcatggttga 6314613  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 32854655 - 32854573
Alignment:
Q  143 gtcaaatagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaa-cccggcccttgcat 224  Q
    ||||| ||||||||||| |  ||||| ||||||||||||||| | ||||  ||| ||||||||||||| ||||||||||||||    
T  32854655 gtcaagtagcctagtggctggagctcacacattttaaatgtggagaagtagggtgtccggggttcgaaccccggcccttgcat 32854573  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 17777111 - 17777180
Alignment:
Q  144 tcaaatagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaaccc 213  Q
    |||| ||||||||||| |   |||||||||||||||||||| | ||||  ||| ||||||||||||||||    
T  17777111 tcaagtagcctagtggatagggctcgcacattttaaatgtggagaagtggggtgtccggggttcgaaccc 17777180  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 11265065 - 11265113
Alignment:
Q  143 gtcaaatagcctagtggttcaagctcgcacattttaaatgtgaaaaagt 191  Q
    ||||||||||||||||| | |||||| ||||||||||| ||| ||||||    
T  11265065 gtcaaatagcctagtggctgaagctcacacattttaaacgtggaaaagt 11265113  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 40904654 - 40904584
Alignment:
Q  143 gtcaaatagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaaccc 213  Q
    |||| |||| ||||||| | |||||||||||||||||||||| | |||| |||| |||| |||||||||||    
T  40904654 gtcagatagtctagtggctgaagctcgcacattttaaatgtggagaagtgaggtgtccgaggttcgaaccc 40904584  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 5328514 - 5328584
Alignment:
Q  143 gtcaaatagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaaccc 213  Q
    ||||| ||||||||||| |  ||||| |||||||||| |||| | |||| |||| ||||||||||||||||    
T  5328514 gtcaagtagcctagtggctagagctcacacattttaattgtggagaagtgaggtgtccggggttcgaaccc 5328584  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 31024411 - 31024347
Alignment:
Q  149 tagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaaccc 213  Q
    ||||||||||| |  ||||| ||||||||||||||| | ||||  ||| ||||||||||||||||    
T  31024411 tagcctagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccc 31024347  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 44364133 - 44364076
Alignment:
Q  153 ctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaac 211  Q
    ||||||||| ||| || ||||||||||||||||||||||  ||||||||||||||||||    
T  44364133 ctagtggttaaagttcacacattttaaatgtgaaaaagt-gggtatccggggttcgaac 44364076  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 44625178 - 44625242
Alignment:
Q  149 tagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaaccc 213  Q
    |||||||||||||  ||||| ||||||||||||||| | ||||  ||| ||||||||||||||||    
T  44625178 tagcctagtggttggagctcccacattttaaatgtggagaagtggggtgtccggggttcgaaccc 44625242  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 25883935 - 25884005
Alignment:
Q  143 gtcaaatagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaaccc 213  Q
    ||||| ||||||||||| |  ||||| ||||||||||||||| | ||||  ||| ||||||||||||||||    
T  25883935 gtcaagtagcctagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccc 25884005  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 15085637 - 15085701
Alignment:
Q  149 tagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaaccc 213  Q
    ||||||||||| |  ||||| |||||||||||| || | |||| |||| ||||||||||||||||    
T  15085637 tagcctagtggctggagctcacacattttaaatatggagaagtgaggtgtccggggttcgaaccc 15085701  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 27329885 - 27329949
Alignment:
Q  149 tagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaaccc 213  Q
    ||||||||||| |  ||||| ||||||||||||||| | ||||  ||| ||||||||||||||||    
T  27329885 tagcctagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccc 27329949  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 41253702 - 41253766
Alignment:
Q  149 tagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaaccc 213  Q
    ||||||||||| |  ||||| |||||||||||| || |||||| |||| | ||||||||||||||    
T  41253702 tagcctagtggctggagctcacacattttaaatatggaaaagtgaggtgttcggggttcgaaccc 41253766  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 41710700 - 41710636
Alignment:
Q  149 tagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaaccc 213  Q
    ||||||||||| |  ||||| ||||||||||||||| | |||| |||| |||||| |||||||||    
T  41710700 tagcctagtggctggagctcacacattttaaatgtggagaagtgaggtgtccgggattcgaaccc 41710636  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 51879212 - 51879148
Alignment:
Q  149 tagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaaccc 213  Q
    ||||||||||| |  ||||| ||||||||||||||| | ||||  ||| ||||||||||||||||    
T  51879212 tagcctagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccc 51879148  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 18503427 - 18503496
Alignment:
Q  143 gtcaaatagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaacc 212  Q
    ||||| ||||||||||||| |||||| ||||||||||||||| | ||||  ||| || ||||||||||||    
T  18503427 gtcaagtagcctagtggttaaagctcacacattttaaatgtggagaagtggggtgtctggggttcgaacc 18503496  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 32047212 - 32047142
Alignment:
Q  143 gtcaaatagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaaccc 213  Q
    ||||||||||||||||| |  ||||| |||| ||||| |||| | |||| |||| ||||||||||||||||    
T  32047212 gtcaaatagcctagtggctagagctcacacaatttaattgtggagaagtgaggtgtccggggttcgaaccc 32047142  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 8241167 - 8241103
Alignment:
Q  149 tagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaaccc 213  Q
    |||||||||||||  ||||| ||||||||||||||| | ||||  ||| ||||||||||||||||    
T  8241167 tagcctagtggttagagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccc 8241103  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 3741071 - 3741007
Alignment:
Q  149 tagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaaccc 213  Q
    ||||||||||| |  ||||| ||||||||||||||| | ||||  ||| ||||||||||||||||    
T  3741071 tagcctagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccc 3741007  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 30305916 - 30305852
Alignment:
Q  149 tagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaaccc 213  Q
    ||||||||||| |  ||||| ||||||||||||||| | |||| |||| ||||||||||||||||    
T  30305916 tagcctagtggctggagctcacacattttaaatgtggagaagtgaggtgtccggggttcgaaccc 30305852  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 36099136 - 36099200
Alignment:
Q  149 tagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaaccc 213  Q
    ||||||||||| |  ||||| ||||||||||||||| | ||||  ||| ||||||||||||||||    
T  36099136 tagcctagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccc 36099200  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 47930619 - 47930688
Alignment:
Q  144 tcaaatagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaaccc 213  Q
    |||| |||||||||||||  ||||| |||| ||||| |||||| ||||  |||||||| |||||||||||    
T  47930619 tcaagtagcctagtggttagagctcacacaatttaattgtgaagaagtggggtatccgaggttcgaaccc 47930688  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Complemental strand, 24983539 - 24983511
Alignment:
Q  163 aagctcgcacattttaaatgtgaaaaagt 191  Q
    |||||||||||||||||||||||||||||    
T  24983539 aagctcgcacattttaaatgtgaaaaagt 24983511  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 236311 - 236374
Alignment:
Q  149 tagcctagtggttcaagctcgcacattttaaatgtgaaaaagtcaggtatccggggttcgaaccc 213  Q
    ||||||||||||| |||||| |||||||| |||||| | ||||  ||| ||||||||||||||||    
T  236311 tagcctagtggttaaagctcacacatttt-aatgtggataagtggggtgtccggggttcgaaccc 236374  T

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