View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15446_high_7 (Length: 378)
Name: NF15446_high_7
Description: NF15446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15446_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 21834873 - 21835168
Alignment:
| Q |
16 |
aaattaaccttaaacatcattcagctgtgcaagaccatgcccttcaaaccctctcagtgaacgattgctagacaccatcttttgtagtttatgaatctta |
115 |
Q |
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| T |
21834873 |
aaattaaccttaaacatcattcagctgtgcaagaccatgcccttcaaaccctctcagtgaacgattgctagacaccatcttttgtagtttatgaatctca |
21834972 |
T |
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| Q |
116 |
tctgtcttcactagcaattctggttcgacttgttattactgtttcatttgtttgttgttgttggaattattagcttgagcctgatttactttgcttgctg |
215 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21834973 |
tctgtcttcactagcaattctggttcgatttgttattactgtttcatttgtttgttgttgttggaattattagcttgagtttgatttactttgcttgctg |
21835072 |
T |
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| Q |
216 |
aagtttgatctcatcggtgtcttaatactttctcacttgtcataaatctgtcaaaaatgtcagactactcattatacgagcaaatttgacttaatt |
311 |
Q |
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| T |
21835073 |
aagtttgatctcatcggtgtcttaacactttctcacttgtcgtaaatctgtcaaaaatgtcagactactcattatacgagcaaatttgacttaatt |
21835168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 374
Target Start/End: Original strand, 21835260 - 21835328
Alignment:
| Q |
306 |
ttaattcataaaaggtgtgtatatggcaatccttgttattagggtcttaaaacttttcttcatctctgt |
374 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
21835260 |
ttaattcataaaagttgtgtatatggcaatccttgttattagggtcttaaaacttttctttatatctgt |
21835328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 47911682 - 47911742
Alignment:
| Q |
197 |
tgatttactttgcttgctgaagtttgatctcatcggtgtcttaatactttctcacttgtca |
257 |
Q |
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| T |
47911682 |
tgatttatttttcttgcttaattttgatctcatcggtgtagtaatattatctcacttgtca |
47911742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 6595135 - 6595228
Alignment:
| Q |
91 |
catcttttgtagtttatgaatcttatctgtcttcactagcaattctggttcgacttgttattactgtttcatttgtttgttgttgttggaatta |
184 |
Q |
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|||||||||||| ||||||||| || | | |||||||||||||||||||| | |||| |||| | ||| |||||||||||||||||||||||| |
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| T |
6595135 |
catcttttgtagagtatgaatctcatgtcttttcactagcaattctggttcaatttgtcattatttttttatttgtttgttgttgttggaatta |
6595228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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