View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15446_low_1 (Length: 650)
Name: NF15446_low_1
Description: NF15446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15446_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 531; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 1 - 649
Target Start/End: Complemental strand, 34573258 - 34572615
Alignment:
| Q |
1 |
ttgaatatataagggatgtggcttatttacctaataa-----ggttttgattaatgatatgatatctaaatctcttaagggtctttgacgttcaactttt |
95 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34573258 |
ttgaatatataagggatgtggcttatttacctaataaaataaggttttgattaatgatatgatatctaaatctcttaagggtctttgacgttcaactttt |
34573159 |
T |
|
| Q |
96 |
gannnnnnnatttcttttcttctgttggctcaacaaaatattcatctaaaatggatccatagccactagatttttatcatagtaccgttccgacatagca |
195 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34573158 |
gatttttttatttcttttcttctgttggctcaacaaaatattcatctaaaatggatccatagccactagatttttatcatagtaccgttccgacatagca |
34573059 |
T |
|
| Q |
196 |
aagttgttctccataagacttgtaaaacattgattgcactttatgaaattgaacttgatgtcatcttgattgaacctggctcttgataataggttttggc |
295 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| |
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| T |
34573058 |
aagttgttctccatcagacttgtaaaacattgattgcactttatgaaattgaacttgatgtcatcttgattgaacctggatcttgatactagg-tttggc |
34572960 |
T |
|
| Q |
296 |
aatttaaacagaatactgaactcccaaacatgattttaatttagcagcacaaaagctttgcatatggaactcgttgaaactgcaagtaatattattacaa |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34572959 |
aatttaaacagaatactgaactcccaaacatgattttaatttagcagcacaaaagctttgcatatgg----------aactgcaagtaatattattacaa |
34572870 |
T |
|
| Q |
396 |
gtgagtggcaagtgaggtgtgaggagtagaaagaaagtaaaaagtg-ttttagtcccacattgctagcaaaggaactaacatatgtgaacttgttctaca |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||||||||||||||| |
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| T |
34572869 |
gtgagtggcaagtgaggtgtgaggagtagaaagaaagtaaaaagtgtttttagtcccacattgccaccaaaggaattaacatatgtgaacttgttctaca |
34572770 |
T |
|
| Q |
495 |
ttaacatcacatgtgaactgaaactttaacaaagtgaatgtgcatgaggcattttattgttatcccaatgtcactgtttctgtacatcgctgacatgtca |
594 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34572769 |
ttaacatcacatgtgaactgaaactttaacaaagtgaatatgcatgaggcattttattgttgtcccaatgtcactgtttctgtacatcgctgacatgtca |
34572670 |
T |
|
| Q |
595 |
attttgtgttgttggcgggggtgcagtttcattggcattgtttgtgatgacaaaa |
649 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34572669 |
attttgtgttgttggcgggggtgcagtttcattggcattgtttgtgatgacaaaa |
34572615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 417
Target Start/End: Complemental strand, 34583358 - 34583329
Alignment:
| Q |
388 |
tattacaagtgagtggcaagtgaggtgtga |
417 |
Q |
| |
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| T |
34583358 |
tattacaagtgagtggcaagtgaggtgtga |
34583329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 370
Target Start/End: Complemental strand, 38494180 - 38494105
Alignment:
| Q |
297 |
atttaaacagaatact--gaactcccaaacatgattttaatttagcagcacaaaagctttgcatatggaactcgtt |
370 |
Q |
| |
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|||||||||||| ||| |||| | |||||| |||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
38494180 |
atttaaacagaacactatgaacacacaaacaaaattttaatttagcatcacaaaagctttgtatatggaactcgtt |
38494105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 367
Target Start/End: Complemental strand, 38499513 - 38499479
Alignment:
| Q |
333 |
aatttagcagcacaaaagctttgcatatggaactc |
367 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
38499513 |
aatttagcagcacaaaagctttgcatatggaactc |
38499479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 38474240 - 38474176
Alignment:
| Q |
216 |
tgtaaaacattgattgcactttatgaaattgaacttgatgtcatcttgattgaacctggctcttg |
280 |
Q |
| |
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||||||| |||||||||||| ||||| ||||| || |||| ||||||||| ||||||||||||| |
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| T |
38474240 |
tgtaaaatgttgattgcacttgatgaatttgaagttaatgttatcttgattcaacctggctcttg |
38474176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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