View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15446_low_10 (Length: 365)

Name: NF15446_low_10
Description: NF15446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15446_low_10
NF15446_low_10
[»] chr3 (10 HSPs)
chr3 (10-350)||(8435764-8436110)
chr3 (13-260)||(8439399-8439652)
chr3 (256-310)||(8439200-8439254)
chr3 (195-245)||(24793199-24793249)
chr3 (195-245)||(24873528-24873578)
chr3 (196-245)||(49387644-49387693)
chr3 (195-246)||(17733860-17733911)
chr3 (195-246)||(19035129-19035180)
chr3 (208-269)||(11044669-11044730)
chr3 (197-266)||(29709533-29709602)
[»] chr1 (13 HSPs)
chr1 (10-180)||(40648917-40649087)
chr1 (10-179)||(20794910-20795078)
chr1 (10-180)||(17051079-17051250)
chr1 (10-180)||(12926496-12926666)
chr1 (195-245)||(41208277-41208327)
chr1 (195-245)||(52955559-52955609)
chr1 (196-245)||(1974975-1975024)
chr1 (196-245)||(1982341-1982390)
chr1 (196-245)||(1989759-1989808)
chr1 (196-269)||(13403912-13403985)
chr1 (113-154)||(1012575-1012615)
chr1 (212-244)||(19868880-19868912)
chr1 (50-120)||(30780902-30780971)
[»] chr7 (13 HSPs)
chr7 (10-180)||(32859853-32860016)
chr7 (195-245)||(12827629-12827679)
chr7 (195-245)||(13286055-13286105)
chr7 (195-245)||(41027292-41027342)
chr7 (196-245)||(5615766-5615815)
chr7 (196-245)||(25441837-25441886)
chr7 (196-245)||(31824471-31824520)
chr7 (195-245)||(15988939-15988989)
chr7 (197-275)||(40701677-40701755)
chr7 (195-245)||(42595105-42595155)
chr7 (76-152)||(23632953-23633027)
chr7 (112-180)||(24995854-24995921)
chr7 (76-168)||(47799267-47799359)
[»] chr6 (8 HSPs)
chr6 (196-281)||(9761680-9761765)
chr6 (195-245)||(8563511-8563561)
chr6 (195-245)||(24370591-24370641)
chr6 (196-245)||(34765078-34765127)
chr6 (195-245)||(22223861-22223911)
chr6 (195-245)||(22249696-22249746)
chr6 (133-176)||(4311187-4311230)
chr6 (132-176)||(4310306-4310350)
[»] scaffold0004 (1 HSPs)
scaffold0004 (196-269)||(241929-242002)
[»] scaffold0535 (1 HSPs)
scaffold0535 (195-245)||(1190-1240)
[»] chr8 (5 HSPs)
chr8 (195-245)||(26362630-26362680)
chr8 (195-245)||(37295626-37295676)
chr8 (196-245)||(14437124-14437173)
chr8 (196-282)||(18536342-18536428)
chr8 (113-154)||(27918027-27918067)
[»] chr5 (7 HSPs)
chr5 (195-245)||(19548739-19548789)
chr5 (196-245)||(20947542-20947591)
chr5 (196-245)||(20957931-20957980)
chr5 (195-245)||(36316110-36316160)
chr5 (77-180)||(12201379-12201481)
chr5 (113-154)||(4607492-4607532)
chr5 (76-145)||(6903211-6903279)
[»] chr4 (7 HSPs)
chr4 (195-245)||(17421592-17421642)
chr4 (195-245)||(26458096-26458146)
chr4 (196-245)||(522488-522537)
chr4 (195-245)||(16057992-16058042)
chr4 (103-153)||(22255641-22255690)
chr4 (111-180)||(41261868-41261936)
chr4 (106-154)||(25655611-25655659)
[»] chr2 (10 HSPs)
chr2 (195-245)||(22901834-22901884)
chr2 (208-282)||(40409265-40409339)
chr2 (196-245)||(27160202-27160251)
chr2 (196-245)||(27170571-27170620)
chr2 (133-175)||(30486940-30486982)
chr2 (77-180)||(24383006-24383109)
chr2 (195-245)||(22909054-22909104)
chr2 (126-176)||(41519917-41519967)
chr2 (232-280)||(16327799-16327847)
chr2 (195-239)||(19342043-19342087)
[»] scaffold0764 (1 HSPs)
scaffold0764 (196-245)||(1070-1119)
[»] scaffold0313 (2 HSPs)
scaffold0313 (196-245)||(5490-5539)
scaffold0313 (196-245)||(19647-19696)
[»] scaffold0262 (1 HSPs)
scaffold0262 (195-245)||(1345-1395)
[»] scaffold0725 (1 HSPs)
scaffold0725 (69-153)||(5798-5881)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 8436110 - 8435764
Alignment:
Q  10 agacttgagtttactggtagtggtgaaaggaggaagataagttgaagacaaagtgggagaagatacagtgtaggcagactatgataacatctatgctcct 109  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8436110 agactcgagtttactggtagtggtgaaaggaggaagataggttgaagacaaagtgggagaagatacggtgtaggcagactatgataacatctatgctcct 8436011  T
Q  110 ttttaatctaatgatccaaaataaactttcccatggtgggaaaaatctccacttacccatactaaacccca------tctggtaggagttctttgaagta 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||      | |||||||| || |||||||||    
T  8436010 ttttaatctaatgatccaaaataaactttcccatggtgggaaaaatctccactgacccatactaaaccccacctagctttggtaggaattttttgaagta 8435911  T
Q  204 caatacattaggaatattcctctaagaatatcatcctagatgcaatacacactacacttcattgatatttcactgttagttagaattcaagagtatatac 303  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||     
T  8435910 caatacattaggaatattcctctaagaatatcatcctagatgtaatacacactacacttcattgatgtttccctgttagttagaattcaagagtatatat 8435811  T
Q  304 acacactagtaaggaatacatgatcccaaaattcaagaggaagggtt 350  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  8435810 acacactagtaaggaatacatgatcccaaaatccaagaggaagggtt 8435764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 8439652 - 8439399
Alignment:
Q  13 cttgagtttactggtagtggtgaaaggaggaagataagttgaagacaaagtgggagaagatacagtgtaggcagactatgataacatctatgctcctttt 112  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8439652 cttgagtttactggtagtggtgaaaggaggaagataggttgaagacaaagtgggagaagatacggtgtaggcagactatgataacatctatgctcctttt 8439553  T
Q  113 taatctaatgatccaaaataaactttcccatggtgggaaaaatctccacttacccatactaaacccc------atctggtaggagttctttgaagtacaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      || ||||||||||||||||||||||||    
T  8439552 taatctaatgatccaaaataaactttcccatggtgggaaaaatctccacttacccatactaaaccccacctagatttggtaggagttctttgaagtacaa 8439453  T
Q  207 tacattaggaatattcctctaagaatatcatcctagatgcaatacacactacac 260  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  8439452 tacattaggaatattcctataagaatatcatcctagatgtaatacacactacac 8439399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 8439254 - 8439200
Alignment:
Q  256 tacacttcattgatatttcactgttagttagaattcaagagtatatacacacact 310  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||| |||||||    
T  8439254 tacacttcattgatgtttcactattagttagaattcaagagtatatatacacact 8439200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 24793199 - 24793249
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  24793199 tttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 24793249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 24873578 - 24873528
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  24873578 tttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 24873528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 49387693 - 49387644
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  49387693 ttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 49387644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 17733860 - 17733911
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatgc 246  Q
    |||||||||||| ||||||||||||||||  ||||||||| |||||||||||    
T  17733860 tttgaagtacaaaacattaggaatattccattaagaatatgatcctagatgc 17733911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 19035129 - 19035180
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatgc 246  Q
    |||||||||||| ||||||||||||||||  ||||||||| |||||||||||    
T  19035129 tttgaagtacaaaacattaggaatattccattaagaatatgatcctagatgc 19035180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 11044730 - 11044669
Alignment:
Q  208 acattaggaatattcctctaagaatatcatcctagatgcaatacacactacacttcattgat 269  Q
    ||||||| ||||||| ||||||| ||||||||||||||  || || ||||||||||||||||    
T  11044730 acattagaaatattcttctaagagtatcatcctagatgttatgcatactacacttcattgat 11044669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 29709602 - 29709533
Alignment:
Q  197 tgaagtacaatacattaggaatattcctctaagaatatcatcctagatgcaatacacactacacttcatt 266  Q
    |||||||||| |||||| |||||||||||| | ||||||||||||||||  ||||| | | |||||||||    
T  29709602 tgaagtacaaaacattaagaatattcctctcacaatatcatcctagatgttatacatattgcacttcatt 29709533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 40649087 - 40648917
Alignment:
Q  10 agacttgagtttactggtagtggtgaaaggaggaagataagttgaagacaaagtgggagaagatacagtgtaggcagactatgataacatctatgctcct 109  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  40649087 agacttgagtttaccggtagtggtgaaaggaggaagataggttgaagacaaagtggaagaagatacagtgtaggcagactatgaaaacatctatgctcct 40648988  T
Q  110 ttttaatctaatgatccaaaataaactttcccatggtgggaaaaatctccacttacccatactaaacccca 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  40648987 ttttaatctaatgatccaaaataaactttcccatggtgggaaaaaactcaacttacccatactaaacccca 40648917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 20794910 - 20795078
Alignment:
Q  10 agacttgagtttactggtagtggtgaaaggaggaagataagttgaagacaaagtgggagaagatacagtgtaggcagactatgataacatctatgctcct 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||    
T  20794910 agacttgagtttactggtagtggtgaaaggaggaagataagttgaagacaaagtggga-aagatacaatgtaggcagactatgataacatctatactcct 20795008  T
Q  110 ttttaatctaatgatccaaaataaactttcccatggtgggaaaaatctccacttacccatactaaacccc 179  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  20795009 ttttaatctaatgatccaaaataaacttttccatggtgggaaaaaactccacttacccatactaaacccc 20795078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 17051079 - 17051250
Alignment:
Q  10 agacttgagtttactggtagtggtgaaaggaggaagataagttgaagacaaagtgggagaagatacagtgtaggcagactatgataacatctatgctcct 109  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17051079 agacttgagtttactggtagtggtgaaaggaggaagataggttgaagacaaagtgggagaagatacagtgtaggcagactatgataacaactatgctcct 17051178  T
Q  110 ttttaatctaatgatccaaaataaactttcccatggtggg-aaaaatctccacttacccatactaaacccca 180  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||| |||||||||||||||||||||||||    
T  17051179 ttttaatctaatgatccaaaataaactttttcatggtgggaaaaaaactccacttacccatactaaacccca 17051250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 12926496 - 12926666
Alignment:
Q  10 agacttgagtttactggtagtggtgaaaggaggaagataagttgaagacaaagtgggagaagatacagtgtaggcagactatgataacatctatgctcct 109  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12926496 agacttgagtttagtggtagtggtgaaatgaggaagataggttgaaaacaaagtggaagaagatacagtgtaggcagactatgataacatctatgctcct 12926595  T
Q  110 ttttaatctaatgatccaaaataaactttcccatggtgggaaaaatctccacttacccatactaaacccca 180  Q
    |||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||    
T  12926596 ttttaatctaatgatccaaaataaactttttcatggtgggaaaaaactccacttacccatactaaacccca 12926666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 41208277 - 41208327
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  41208277 tttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 41208327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 52955609 - 52955559
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  52955609 tttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 52955559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 1975024 - 1974975
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  1975024 ttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 1974975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 1982390 - 1982341
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  1982390 ttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 1982341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 1989808 - 1989759
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  1989808 ttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 1989759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 269
Target Start/End: Complemental strand, 13403985 - 13403912
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatgcaatacacactacacttcattgat 269  Q
    ||||||||||| |||||||||||| |||| ||||||||||||| || |||  || || ||||||||||||||||    
T  13403985 ttgaagtacaaaacattaggaatactcctataagaatatcatcatatatggtatgcatactacacttcattgat 13403912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 1012615 - 1012575
Alignment:
Q  113 taatctaatgatccaaaataaactttcccatggtgggaaaaa 154  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  1012615 taatctaatgatccaaaa-aaactttcccatggtgggaaaaa 1012575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 19868912 - 19868880
Alignment:
Q  212 taggaatattcctctaagaatatcatcctagat 244  Q
    |||||||||||||||||||||||||||||||||    
T  19868912 taggaatattcctctaagaatatcatcctagat 19868880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 30780902 - 30780971
Alignment:
Q  50 gttgaagacaaagtgggagaagatacagtgtaggcagactatgataacatctatgctcctttttaatctaa 120  Q
    ||||||||||||| |||| || || ||||||||  |||||||||||| ||| ||| |||||||||||||||    
T  30780902 gttgaagacaaag-gggaaaaaattcagtgtagagagactatgataaaatcaatgttcctttttaatctaa 30780971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 9e-55; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 32859853 - 32860016
Alignment:
Q  10 agacttgagtttactggtagtggtgaaaggaggaagataagttgaagacaaagtgggagaagatacagtgtaggcagactatgataacatctatgctcct 109  Q
    |||||| |||||||||||| |||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  32859853 agacttaagtttactggtaatggtgaaaggaggaagatagattgaagataaagtgggagaagatacagtgtaggcagactatgataatatctatgctctt 32859952  T
Q  110 ttttaatctaatgatccaaaataaactttcccatggtgggaaaaatctccacttacccatactaaacccca 180  Q
    |||||||||||||||||||||||||||||||||       ||||| || ||||||||||||||||||||||    
T  32859953 ttttaatctaatgatccaaaataaactttccca-------aaaaaacttcacttacccatactaaacccca 32860016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 12827679 - 12827629
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  12827679 tttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 12827629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 13286105 - 13286055
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  13286105 tttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 13286055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 41027292 - 41027342
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  41027292 tttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 41027342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 5615815 - 5615766
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  5615815 ttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 5615766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 25441837 - 25441886
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  25441837 ttgaagtacaagacattaggaatattccattaagaatatcatcctagatg 25441886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 31824471 - 31824520
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  31824471 ttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 31824520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 15988989 - 15988939
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| ||||||||||||||||   |||||||||||||||||||    
T  15988989 tttgaagtacaaaacattaggaatattccatcaagaatatcatcctagatg 15988939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 275
Target Start/End: Original strand, 40701677 - 40701755
Alignment:
Q  197 tgaagtacaatacattaggaatattcctctaagaatatcatcctagatgcaatacacactacacttcattgatatttca 275  Q
    |||||| ||| | ||||||||||||||   ||||||||||| |||||||  ||||||||| ||||||| |||| |||||    
T  40701677 tgaagtgcaaaatattaggaatattccatcaagaatatcattctagatgttatacacactgcacttcaatgatgtttca 40701755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 42595105 - 42595155
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| | |||| |||||||||  ||||||||||||||||||||    
T  42595105 tttgaagtacaaaaaattaagaatattccattaagaatatcatcctagatg 42595155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 23633027 - 23632953
Alignment:
Q  76 agtgtaggcagactatgataacatctatgctcctttttaatctaatgatccaaaataaactttcccatggtgggaaa 152  Q
    ||||| ||||||| || |||| |||||| ||||| |||||||||||| |  |||| ||||||| |||||||||||||    
T  23633027 agtgtgggcagaccatcataaaatctatactcctctttaatctaatggt--aaaaaaaacttttccatggtgggaaa 23632953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 24995921 - 24995854
Alignment:
Q  112 ttaatctaatgatccaaaataaactttcccatggtgggaaaaatctccacttacccatactaaacccca 180  Q
    ||||||||||| || |||| | ||||||||||||||||||| | |||| ||| ||||| ||||||||||    
T  24995921 ttaatctaatggtcaaaaa-atactttcccatggtgggaaacaactcccctttcccattctaaacccca 24995854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 47799359 - 47799267
Alignment:
Q  76 agtgtaggcagactatgataacatctatgctcctttttaatctaatgatccaaaataaactttcccatggtgggaaaaatctccacttaccca 168  Q
    |||| ||| |||| ||||||| ||| || | ||| |||||||||||| |  |||  ||||||||||||| ||||||||| || ||||||||||    
T  47799359 agtgcaggtagaccatgataagatcaatacacctctttaatctaatggtaaaaatcaaactttcccatgatgggaaaaaacttcacttaccca 47799267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 196 - 281
Target Start/End: Complemental strand, 9761765 - 9761680
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatgcaatacacactacacttcattgatatttcactgtta 281  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||| ||| |||||||    
T  9761765 ttgaagtacaaaacattaggaatattcctctaagaatatcatcctagatgttatacacactgcacttcattgatgttttactgtta 9761680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 8563561 - 8563511
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  8563561 tttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 8563511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 24370641 - 24370591
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  24370641 tttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 24370591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 34765078 - 34765127
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  34765078 ttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 34765127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 22223911 - 22223861
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| | ||||||||||||||  ||||||||||||||||||||    
T  22223911 tttgaagtacaaaaaattaggaatattccattaagaatatcatcctagatg 22223861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 22249746 - 22249696
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| | ||||||||||||||  ||||||||||||||||||||    
T  22249746 tttgaagtacaaaaaattaggaatattccattaagaatatcatcctagatg 22249696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 4311187 - 4311230
Alignment:
Q  133 aactttcccatggtgggaaaaatctccacttacccatactaaac 176  Q
    |||| ||||||||||||||||| || ||||||||||||||||||    
T  4311187 aactctcccatggtgggaaaaaacttcacttacccatactaaac 4311230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 4310350 - 4310306
Alignment:
Q  132 aaactttcccatggtgggaaaaatctccacttacccatactaaac 176  Q
    ||||||||||||| ||||| ||| || ||||||||||||||||||    
T  4310350 aaactttcccatgatgggacaaaacttcacttacccatactaaac 4310306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 196 - 269
Target Start/End: Complemental strand, 242002 - 241929
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatgcaatacacactacacttcattgat 269  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  242002 ttgaagtacaaaacattaggaatatttctctaagaatatcatcctagatgttatacacactacacttcattgat 241929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 1240 - 1190
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  1240 tttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 1190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 26362680 - 26362630
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  26362680 tttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 26362630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 37295626 - 37295676
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| |||||||||||||| |  ||||||||||||||||||||    
T  37295626 tttgaagtacaaaacattaggaatatttcattaagaatatcatcctagatg 37295676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 14437124 - 14437173
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    ||||||||||| ||||||||||||||||   |||||||||||||||||||    
T  14437124 ttgaagtacaaaacattaggaatattccatcaagaatatcatcctagatg 14437173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 282
Target Start/End: Original strand, 18536342 - 18536428
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatgcaatacacactacacttcattgatatttcactgttag 282  Q
    ||||||||||| | |||| |||||||||   ||||||||||||||||||   ||||| | | |||||||||||| ||||||| ||||    
T  18536342 ttgaagtacaaaatattatgaatattccatcaagaatatcatcctagatcttatacatagtgcacttcattgatgtttcactattag 18536428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 27918027 - 27918067
Alignment:
Q  113 taatctaatgatccaaaataaactttcccatggtgggaaaaa 154  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  27918027 taatccaatgatccaaaa-aaactttcccatggtgggaaaaa 27918067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 19548789 - 19548739
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  19548789 tttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 19548739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 20947542 - 20947591
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  20947542 ttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 20947591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 20957931 - 20957980
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  20957931 ttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 20957980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 36316110 - 36316160
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| ||||| ||||||||||  ||||||||||||||||||||    
T  36316110 tttgaagtacaaaacatttggaatattccattaagaatatcatcctagatg 36316160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 12201481 - 12201379
Alignment:
Q  77 gtgtaggcagactatgataacatctatgctcctttttaatctaatgatccaaaataaactttcccatggtgggaaaaatctccacttacccatactaaac 176  Q
    ||||| |||| ||||||||| ||  || ||||| |||||| ||||||| ||||| |||||||| |||||| ||||| | |||  ||| ||||||||||||    
T  12201481 gtgtaagcagtctatgataaaattaatactcctctttaatttaatgattcaaaa-aaactttctcatggtaggaaacaactctcctttcccatactaaac 12201383  T
Q  177 ccca 180  Q
    ||||    
T  12201382 ccca 12201379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 4607532 - 4607492
Alignment:
Q  113 taatctaatgatccaaaataaactttcccatggtgggaaaaa 154  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  4607532 taatccaatgatccaaaa-aaactttcccatggtgggaaaaa 4607492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 6903211 - 6903279
Alignment:
Q  76 agtgtaggcagactatgataacatctatgctcctttttaatctaatgatccaaaataaactttcccatgg 145  Q
    ||||| ||||||| || |||| |||||| ||||| ||||||||||||||  |||| ||||||||||||||    
T  6903211 agtgtgggcagaccatcataaaatctatactcctctttaatctaatgat-aaaaaaaaactttcccatgg 6903279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 17421642 - 17421592
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  17421642 tttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 17421592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 26458096 - 26458146
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  26458096 tttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 26458146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 522537 - 522488
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  522537 ttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 522488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 16057992 - 16058042
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| | ||| ||||||||||  ||||||||||||||||||||    
T  16057992 tttgaagtacaaaatattgggaatattccattaagaatatcatcctagatg 16058042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 22255690 - 22255641
Alignment:
Q  103 tgctcctttttaatctaatgatccaaaataaactttcccatggtgggaaaa 153  Q
    ||||||| ||||||||||||| |||||| ||||||||||||||||| ||||    
T  22255690 tgctcctctttaatctaatga-ccaaaaaaaactttcccatggtggaaaaa 22255641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 41261868 - 41261936
Alignment:
Q  111 tttaatctaatgatccaaaataaactttcccatggtgggaaaaatctccacttacccatactaaacccca 180  Q
    |||||||||||||| ||||| ||||||||||||||| ||||| | |||   || ||||||||||||||||    
T  41261868 tttaatctaatgattcaaaa-aaactttcccatggtaggaaacaactctcatttcccatactaaacccca 41261936  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 25655611 - 25655659
Alignment:
Q  106 tcctttttaatctaatgatccaaaataaactttcccatggtgggaaaaa 154  Q
    |||| |||||||||||| || ||||  ||||||||||||||||||||||    
T  25655611 tcctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaa 25655659  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 22901834 - 22901884
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  22901834 tttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 22901884  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 282
Target Start/End: Complemental strand, 40409339 - 40409265
Alignment:
Q  208 acattaggaatattcctctaagaatatcatcctagatgcaatacacactacacttcattgatatttcactgttag 282  Q
    ||||||||||||||||   |||||||||||||||||||  | ||| |||||||||||||||| ||||||| ||||    
T  40409339 acattaggaatattccatcaagaatatcatcctagatgttacacatactacacttcattgatgtttcactattag 40409265  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 27160251 - 27160202
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  27160251 ttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 27160202  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 27170620 - 27170571
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  27170620 ttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 27170571  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 30486940 - 30486982
Alignment:
Q  133 aactttcccatggtgggaaaaatctccacttacccatactaaa 175  Q
    |||||||||||||||||||||| || |||||||||||||||||    
T  30486940 aactttcccatggtgggaaaaaacttcacttacccatactaaa 30486982  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 24383006 - 24383109
Alignment:
Q  77 gtgtaggcagactatgataacatctatgctcctttttaatctaatgatccaaaataaactttcccatggt-gggaaaaatctccacttacccatactaaa 175  Q
    |||||||||| ||||||||| |||  | ||||| |||||| ||||| | ||||| ||||||||||||||| |||||| | || | ||| |||||||||||    
T  24383006 gtgtaggcagtctatgataaaatcagtactcctctttaatttaatggtacaaaa-aaactttcccatggtggggaaacaacttccctttcccatactaaa 24383104  T
Q  176 cccca 180  Q
    |||||    
T  24383105 cccca 24383109  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 22909104 - 22909054
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    ||||||||| || | ||||||||||||||  ||||||||||||||||||||    
T  22909104 tttgaagtataaaaaattaggaatattccattaagaatatcatcctagatg 22909054  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 41519917 - 41519967
Alignment:
Q  126 caaaataaactttcccatggtgggaaaaatctccacttacccatactaaac 176  Q
    ||||| ||||||||||||||||||||||| || | ||| ||||||||||||    
T  41519917 caaaaaaaactttcccatggtgggaaaaaacttccctttcccatactaaac 41519967  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 16327799 - 16327847
Alignment:
Q  232 tatcatcctagatgcaatacacactacacttcattgatatttcactgtt 280  Q
    |||||||||||||| |||||| ||| |||||||| ||| ||||||||||    
T  16327799 tatcatcctagatgtaatacatactgcacttcatcgatgtttcactgtt 16327847  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 19342043 - 19342087
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcc 239  Q
    |||||||||||| |||||||||||||||   ||||||||||||||    
T  19342043 tttgaagtacaaaacattaggaatattctattaagaatatcatcc 19342087  T

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Target: scaffold0764 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0764
Description:

Target: scaffold0764; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 1119 - 1070
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  1119 ttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 1070  T

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Target: scaffold0313 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 5490 - 5539
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  5490 ttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 5539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 19647 - 19696
Alignment:
Q  196 ttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  19647 ttgaagtacaaaacattaggaatattccattaagaatatcatcctagatg 19696  T

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Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 1345 - 1395
Alignment:
Q  195 tttgaagtacaatacattaggaatattcctctaagaatatcatcctagatg 245  Q
    |||||||||||| ||||||||||||||||   |||||||||||||||||||    
T  1345 tttgaagtacaaaacattaggaatattccatcaagaatatcatcctagatg 1395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0725 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 5881 - 5798
Alignment:
Q  69 aagatacagtgtaggcagactatgataacatctatgctcctttttaatctaatgatccaaaataaactttcccatggtgggaaaa 153  Q
    |||||| ||||| | ||||| || |||| || | ||||||| ||||||||||||| |||||||  |||||| |||||||||||||    
T  5881 aagatatagtgttgacagaccataataaaatatgtgctcctctttaatctaatga-ccaaaatctactttctcatggtgggaaaa 5798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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